Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15668 | 5' | -55.3 | NC_004065.1 | + | 191691 | 0.68 | 0.95274 |
Target: 5'- aGGACu-CC-UCGGUCGUCA-CCGAg- -3' miRNA: 3'- -CCUGcuGGcAGCCAGCAGUaGGCUga -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 151492 | 0.67 | 0.956467 |
Target: 5'- --uCGACCuacugGcCGGUCGUC-UCCGACa -3' miRNA: 3'- ccuGCUGG-----CaGCCAGCAGuAGGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 56053 | 0.67 | 0.956467 |
Target: 5'- aGACGACC--UGGUCGUCAgCCG-Cg -3' miRNA: 3'- cCUGCUGGcaGCCAGCAGUaGGCuGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 96771 | 0.67 | 0.956467 |
Target: 5'- cGGAC--UCGUC-GUCGUCcUCCGACg -3' miRNA: 3'- -CCUGcuGGCAGcCAGCAGuAGGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 149056 | 0.67 | 0.959989 |
Target: 5'- cGGACucgGACUGcCGGUCGUCGUUCc--- -3' miRNA: 3'- -CCUG---CUGGCaGCCAGCAGUAGGcuga -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 22247 | 0.67 | 0.959989 |
Target: 5'- cGAUGACCGUCGG-CGUgG-CCGugGCg -3' miRNA: 3'- cCUGCUGGCAGCCaGCAgUaGGC--UGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 174657 | 0.67 | 0.959989 |
Target: 5'- cGGAgGACUGg-GGUCGUCG-CCGGg- -3' miRNA: 3'- -CCUgCUGGCagCCAGCAGUaGGCUga -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 57585 | 0.67 | 0.963309 |
Target: 5'- aGA--GCCG-CGGUCGUCG-CCGGCa -3' miRNA: 3'- cCUgcUGGCaGCCAGCAGUaGGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 130358 | 0.67 | 0.966432 |
Target: 5'- cGGACG-CUGUCGGcgccgCG-CcgCCGGCUu -3' miRNA: 3'- -CCUGCuGGCAGCCa----GCaGuaGGCUGA- -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 26338 | 0.67 | 0.966432 |
Target: 5'- aGACGA-CGUCGucGUCGUCAUCgGcGCUg -3' miRNA: 3'- cCUGCUgGCAGC--CAGCAGUAGgC-UGA- -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 142010 | 0.67 | 0.966432 |
Target: 5'- cGGCgGAUCGUCGacgacGUCGUCGUCgaCGACg -3' miRNA: 3'- cCUG-CUGGCAGC-----CAGCAGUAG--GCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 221954 | 0.67 | 0.969363 |
Target: 5'- aGACGGCCGaaCGGaUCGcgAUCCGGCg -3' miRNA: 3'- cCUGCUGGCa-GCC-AGCagUAGGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 26264 | 0.67 | 0.969363 |
Target: 5'- ---gGACCGUCGuauguUCGUCA-CCGACg -3' miRNA: 3'- ccugCUGGCAGCc----AGCAGUaGGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 227723 | 0.67 | 0.969363 |
Target: 5'- cGACGGCCGUC---CGUCuUCCGugUu -3' miRNA: 3'- cCUGCUGGCAGccaGCAGuAGGCugA- -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 131823 | 0.67 | 0.969363 |
Target: 5'- cGGACGACCuggUGGUCGcccugaUCAUggCCGugUa -3' miRNA: 3'- -CCUGCUGGca-GCCAGC------AGUA--GGCugA- -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 200014 | 0.67 | 0.971303 |
Target: 5'- cGGGC-ACCG-CGGUCGUCAggggcaggugccguUCCG-Cg -3' miRNA: 3'- -CCUGcUGGCaGCCAGCAGU--------------AGGCuGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 227528 | 0.67 | 0.972107 |
Target: 5'- cGGACGuCgggggGUCGGUC-UCAUCCGGg- -3' miRNA: 3'- -CCUGCuGg----CAGCCAGcAGUAGGCUga -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 112849 | 0.67 | 0.972107 |
Target: 5'- aGAUGuuGCCGUCGGacagcaGcUCGUCCGGCa -3' miRNA: 3'- cCUGC--UGGCAGCCag----C-AGUAGGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 142208 | 0.66 | 0.974669 |
Target: 5'- gGGAgGACCGUCG-UCGcCAUaucuggauuucgCCGACc -3' miRNA: 3'- -CCUgCUGGCAGCcAGCaGUA------------GGCUGa -5' |
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15668 | 5' | -55.3 | NC_004065.1 | + | 107710 | 0.66 | 0.974669 |
Target: 5'- cGGaACGACCGUgUGGauguUCGUCGcgUCGACg -3' miRNA: 3'- -CC-UGCUGGCA-GCC----AGCAGUa-GGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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