miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15668 5' -55.3 NC_004065.1 + 138817 0.66 0.977055
Target:  5'- cGGACGgcACCGUCGc-CGUCAgUCCGcCg -3'
miRNA:   3'- -CCUGC--UGGCAGCcaGCAGU-AGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 140030 0.71 0.864046
Target:  5'- cGACGGcuCCGUCGGguucgcucccgUCGUCGucccUCCGGCUc -3'
miRNA:   3'- cCUGCU--GGCAGCC-----------AGCAGU----AGGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 140230 0.69 0.92068
Target:  5'- aGACGGCCGcCGauGUCG-UAUCCGAUa -3'
miRNA:   3'- cCUGCUGGCaGC--CAGCaGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 142010 0.67 0.966432
Target:  5'- cGGCgGAUCGUCGacgacGUCGUCGUCgaCGACg -3'
miRNA:   3'- cCUG-CUGGCAGC-----CAGCAGUAG--GCUGa -5'
15668 5' -55.3 NC_004065.1 + 142208 0.66 0.974669
Target:  5'- gGGAgGACCGUCG-UCGcCAUaucuggauuucgCCGACc -3'
miRNA:   3'- -CCUgCUGGCAGCcAGCaGUA------------GGCUGa -5'
15668 5' -55.3 NC_004065.1 + 149056 0.67 0.959989
Target:  5'- cGGACucgGACUGcCGGUCGUCGUUCc--- -3'
miRNA:   3'- -CCUG---CUGGCaGCCAGCAGUAGGcuga -5'
15668 5' -55.3 NC_004065.1 + 149070 0.7 0.884784
Target:  5'- aGGcCGAUCGg-GGUCGUCGUCaCGAUc -3'
miRNA:   3'- -CCuGCUGGCagCCAGCAGUAG-GCUGa -5'
15668 5' -55.3 NC_004065.1 + 149611 0.7 0.897597
Target:  5'- aGACGACC--CGGUUGUCGUCCa--- -3'
miRNA:   3'- cCUGCUGGcaGCCAGCAGUAGGcuga -5'
15668 5' -55.3 NC_004065.1 + 150894 0.68 0.944656
Target:  5'- cGACGAguCCGUCGGgaacaaGggGUCCGACg -3'
miRNA:   3'- cCUGCU--GGCAGCCag----CagUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 151422 0.72 0.821691
Target:  5'- aGGGCGGCCGgcgcgccagcucgCGGUCGccgacgaUCAUCgCGGCg -3'
miRNA:   3'- -CCUGCUGGCa------------GCCAGC-------AGUAG-GCUGa -5'
15668 5' -55.3 NC_004065.1 + 151492 0.67 0.956467
Target:  5'- --uCGACCuacugGcCGGUCGUC-UCCGACa -3'
miRNA:   3'- ccuGCUGG-----CaGCCAGCAGuAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 151596 0.68 0.95274
Target:  5'- cGACGAgUG-CGG-CGUCAuccUCCGACa -3'
miRNA:   3'- cCUGCUgGCaGCCaGCAGU---AGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 152401 0.66 0.981325
Target:  5'- gGGACagcGCCGUCGG-CGUCA--CGGCc -3'
miRNA:   3'- -CCUGc--UGGCAGCCaGCAGUagGCUGa -5'
15668 5' -55.3 NC_004065.1 + 162140 0.71 0.825754
Target:  5'- cGACGAgCGUCGGUCaggCcgCCGAUg -3'
miRNA:   3'- cCUGCUgGCAGCCAGca-GuaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 163823 0.66 0.984971
Target:  5'- uGGAgaguuCGAaucucuuaCGUCGGUCGUCAUCgUGAg- -3'
miRNA:   3'- -CCU-----GCUg-------GCAGCCAGCAGUAG-GCUga -5'
15668 5' -55.3 NC_004065.1 + 170841 0.66 0.981325
Target:  5'- cGACGACaaaGUC-GUCGUgAUCCGcGCg -3'
miRNA:   3'- cCUGCUGg--CAGcCAGCAgUAGGC-UGa -5'
15668 5' -55.3 NC_004065.1 + 172180 0.78 0.507488
Target:  5'- uGGGCGAaccgUCGUCGGUCGUC-UCCGGa- -3'
miRNA:   3'- -CCUGCU----GGCAGCCAGCAGuAGGCUga -5'
15668 5' -55.3 NC_004065.1 + 174657 0.67 0.959989
Target:  5'- cGGAgGACUGg-GGUCGUCG-CCGGg- -3'
miRNA:   3'- -CCUgCUGGCagCCAGCAGUaGGCUga -5'
15668 5' -55.3 NC_004065.1 + 185573 0.66 0.984971
Target:  5'- aGGAaGACUG-CGGUCGUUcgcgauGUCCGcACg -3'
miRNA:   3'- -CCUgCUGGCaGCCAGCAG------UAGGC-UGa -5'
15668 5' -55.3 NC_004065.1 + 191691 0.68 0.95274
Target:  5'- aGGACu-CC-UCGGUCGUCA-CCGAg- -3'
miRNA:   3'- -CCUGcuGGcAGCCAGCAGUaGGCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.