miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15668 5' -55.3 NC_004065.1 + 197269 0.73 0.774603
Target:  5'- uGACGGUCGUCGGUCGgaucgUCAUCCG-Ca -3'
miRNA:   3'- cCUGCUGGCAGCCAGC-----AGUAGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 199221 0.68 0.935717
Target:  5'- aGGCGAuguaccguccguCCGUCaGUCGUCAUCguCGGCg -3'
miRNA:   3'- cCUGCU------------GGCAGcCAGCAGUAG--GCUGa -5'
15668 5' -55.3 NC_004065.1 + 200014 0.67 0.971303
Target:  5'- cGGGC-ACCG-CGGUCGUCAggggcaggugccguUCCG-Cg -3'
miRNA:   3'- -CCUGcUGGCaGCCAGCAGU--------------AGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 201727 0.66 0.977055
Target:  5'- cGGGuCGACCGggaucucgCGGggagCGUCCGGCUc -3'
miRNA:   3'- -CCU-GCUGGCa-------GCCagcaGUAGGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 202730 0.72 0.792199
Target:  5'- aGGACGGCCGuuUCGGcUCGUgucccgagcgcCGUCCGAa- -3'
miRNA:   3'- -CCUGCUGGC--AGCC-AGCA-----------GUAGGCUga -5'
15668 5' -55.3 NC_004065.1 + 211899 0.71 0.856746
Target:  5'- ---gGACC-UgGGUCGUCAUCUGACa -3'
miRNA:   3'- ccugCUGGcAgCCAGCAGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 212773 0.68 0.948804
Target:  5'- uGGGCGugCGgcucagCGGagGUCGUgCGGCc -3'
miRNA:   3'- -CCUGCugGCa-----GCCagCAGUAgGCUGa -5'
15668 5' -55.3 NC_004065.1 + 213232 0.66 0.979271
Target:  5'- uGGACGAUgGuUCGGUCGUCGguaGcACa -3'
miRNA:   3'- -CCUGCUGgC-AGCCAGCAGUaggC-UGa -5'
15668 5' -55.3 NC_004065.1 + 213301 0.68 0.948804
Target:  5'- uGGACGACgGuUCGGUCGUCGguagCG-Ca -3'
miRNA:   3'- -CCUGCUGgC-AGCCAGCAGUag--GCuGa -5'
15668 5' -55.3 NC_004065.1 + 221954 0.67 0.969363
Target:  5'- aGACGGCCGaaCGGaUCGcgAUCCGGCg -3'
miRNA:   3'- cCUGCUGGCa-GCC-AGCagUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 222836 0.7 0.878069
Target:  5'- aGGCGGCCacagcUCGGUCGUCAU-UGACa -3'
miRNA:   3'- cCUGCUGGc----AGCCAGCAGUAgGCUGa -5'
15668 5' -55.3 NC_004065.1 + 224010 0.66 0.976824
Target:  5'- gGGACGagagggaGCCGacgaaguacUCGGUCGUCG-CCGGu- -3'
miRNA:   3'- -CCUGC-------UGGC---------AGCCAGCAGUaGGCUga -5'
15668 5' -55.3 NC_004065.1 + 224101 0.71 0.841597
Target:  5'- cGGGCGGCCGaguaCGaGUUGUCGcucgcguccUCCGACa -3'
miRNA:   3'- -CCUGCUGGCa---GC-CAGCAGU---------AGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 227482 0.72 0.792199
Target:  5'- cGGACGGCCGUCGaccgaUCGgacCAgCCGACg -3'
miRNA:   3'- -CCUGCUGGCAGCc----AGCa--GUaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 227528 0.67 0.972107
Target:  5'- cGGACGuCgggggGUCGGUC-UCAUCCGGg- -3'
miRNA:   3'- -CCUGCuGg----CAGCCAGcAGUAGGCUga -5'
15668 5' -55.3 NC_004065.1 + 227723 0.67 0.969363
Target:  5'- cGACGGCCGUC---CGUCuUCCGugUu -3'
miRNA:   3'- cCUGCUGGCAGccaGCAGuAGGCugA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.