miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15668 5' -55.3 NC_004065.1 + 96549 0.66 0.977055
Target:  5'- uGGACGAggagUCGcUGGacUCGUCcgCCGACg -3'
miRNA:   3'- -CCUGCU----GGCaGCC--AGCAGuaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 115076 0.66 0.977055
Target:  5'- aGGACGcgGCC-UCGGUCGgcUCuUCUGACc -3'
miRNA:   3'- -CCUGC--UGGcAGCCAGC--AGuAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 107710 0.66 0.974669
Target:  5'- cGGaACGACCGUgUGGauguUCGUCGcgUCGACg -3'
miRNA:   3'- -CC-UGCUGGCA-GCC----AGCAGUa-GGCUGa -5'
15668 5' -55.3 NC_004065.1 + 112849 0.67 0.972107
Target:  5'- aGAUGuuGCCGUCGGacagcaGcUCGUCCGGCa -3'
miRNA:   3'- cCUGC--UGGCAGCCag----C-AGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 26264 0.67 0.969363
Target:  5'- ---gGACCGUCGuauguUCGUCA-CCGACg -3'
miRNA:   3'- ccugCUGGCAGCc----AGCAGUaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 130358 0.67 0.966432
Target:  5'- cGGACG-CUGUCGGcgccgCG-CcgCCGGCUu -3'
miRNA:   3'- -CCUGCuGGCAGCCa----GCaGuaGGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 200014 0.67 0.971303
Target:  5'- cGGGC-ACCG-CGGUCGUCAggggcaggugccguUCCG-Cg -3'
miRNA:   3'- -CCUGcUGGCaGCCAGCAGU--------------AGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 26338 0.67 0.966432
Target:  5'- aGACGA-CGUCGucGUCGUCAUCgGcGCUg -3'
miRNA:   3'- cCUGCUgGCAGC--CAGCAGUAGgC-UGA- -5'
15668 5' -55.3 NC_004065.1 + 142010 0.67 0.966432
Target:  5'- cGGCgGAUCGUCGacgacGUCGUCGUCgaCGACg -3'
miRNA:   3'- cCUG-CUGGCAGC-----CAGCAGUAG--GCUGa -5'
15668 5' -55.3 NC_004065.1 + 174657 0.67 0.959989
Target:  5'- cGGAgGACUGg-GGUCGUCG-CCGGg- -3'
miRNA:   3'- -CCUgCUGGCagCCAGCAGUaGGCUga -5'
15668 5' -55.3 NC_004065.1 + 151492 0.67 0.956467
Target:  5'- --uCGACCuacugGcCGGUCGUC-UCCGACa -3'
miRNA:   3'- ccuGCUGG-----CaGCCAGCAGuAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 151596 0.68 0.95274
Target:  5'- cGACGAgUG-CGG-CGUCAuccUCCGACa -3'
miRNA:   3'- cCUGCUgGCaGCCaGCAGU---AGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 213301 0.68 0.948804
Target:  5'- uGGACGACgGuUCGGUCGUCGguagCG-Ca -3'
miRNA:   3'- -CCUGCUGgC-AGCCAGCAGUag--GCuGa -5'
15668 5' -55.3 NC_004065.1 + 97225 0.68 0.948804
Target:  5'- gGGAUGuuCGg-GGUCG-CGUCCGGCg -3'
miRNA:   3'- -CCUGCugGCagCCAGCaGUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 150894 0.68 0.944656
Target:  5'- cGACGAguCCGUCGGgaacaaGggGUCCGACg -3'
miRNA:   3'- cCUGCU--GGCAGCCag----CagUAGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 172180 0.78 0.507488
Target:  5'- uGGGCGAaccgUCGUCGGUCGUC-UCCGGa- -3'
miRNA:   3'- -CCUGCU----GGCAGCCAGCAGuAGGCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.