miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15668 5' -55.3 NC_004065.1 + 8313 0.68 0.944656
Target:  5'- aGGACuGACCGU-GGUCGUUggucugguaGUCgGGCg -3'
miRNA:   3'- -CCUG-CUGGCAgCCAGCAG---------UAGgCUGa -5'
15668 5' -55.3 NC_004065.1 + 9543 0.68 0.95274
Target:  5'- cGGCGAUCG-CGGUCGgcgUGUgCGACg -3'
miRNA:   3'- cCUGCUGGCaGCCAGCa--GUAgGCUGa -5'
15668 5' -55.3 NC_004065.1 + 17669 0.74 0.690599
Target:  5'- uGACGACCGaCGGUCGUCcgUCG-Cg -3'
miRNA:   3'- cCUGCUGGCaGCCAGCAGuaGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 17917 1.1 0.006414
Target:  5'- cGGACGACCGUCGGUCGUCAUCCGACUc -3'
miRNA:   3'- -CCUGCUGGCAGCCAGCAGUAGGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 22247 0.67 0.959989
Target:  5'- cGAUGACCGUCGG-CGUgG-CCGugGCg -3'
miRNA:   3'- cCUGCUGGCAGCCaGCAgUaGGC--UGa -5'
15668 5' -55.3 NC_004065.1 + 22919 0.68 0.935248
Target:  5'- uGGCGGCgGUCGGcgguuccgucucgUCGUCAgauugucgCCGGCa -3'
miRNA:   3'- cCUGCUGgCAGCC-------------AGCAGUa-------GGCUGa -5'
15668 5' -55.3 NC_004065.1 + 26264 0.67 0.969363
Target:  5'- ---gGACCGUCGuauguUCGUCA-CCGACg -3'
miRNA:   3'- ccugCUGGCAGCc----AGCAGUaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 26338 0.67 0.966432
Target:  5'- aGACGA-CGUCGucGUCGUCAUCgGcGCUg -3'
miRNA:   3'- cCUGCUgGCAGC--CAGCAGUAGgC-UGA- -5'
15668 5' -55.3 NC_004065.1 + 31124 0.69 0.930923
Target:  5'- cGGGCGcucgaacccGCCGUCgacaggcuGGUCGUCGU-CGGCUu -3'
miRNA:   3'- -CCUGC---------UGGCAG--------CCAGCAGUAgGCUGA- -5'
15668 5' -55.3 NC_004065.1 + 43338 0.66 0.979271
Target:  5'- cGGAUgcccgGACCGUccgaacgugCGGUCuGUCGcgCCGACg -3'
miRNA:   3'- -CCUG-----CUGGCA---------GCCAG-CAGUa-GGCUGa -5'
15668 5' -55.3 NC_004065.1 + 43557 0.66 0.983223
Target:  5'- uGACGA-CGUCGuuuuuGUCGUCGUCUGGu- -3'
miRNA:   3'- cCUGCUgGCAGC-----CAGCAGUAGGCUga -5'
15668 5' -55.3 NC_004065.1 + 44927 0.69 0.903689
Target:  5'- cGACGACCaUCGcuUCGUCG-CCGACg -3'
miRNA:   3'- cCUGCUGGcAGCc-AGCAGUaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 52370 0.66 0.980726
Target:  5'- cGGACGACgguucagcggucuaCGUCGGUCuUCGgcgCCGccGCUu -3'
miRNA:   3'- -CCUGCUG--------------GCAGCCAGcAGUa--GGC--UGA- -5'
15668 5' -55.3 NC_004065.1 + 53691 0.68 0.948804
Target:  5'- cGACcACCGUCGGUCGgggCGagaaCGACg -3'
miRNA:   3'- cCUGcUGGCAGCCAGCa--GUag--GCUGa -5'
15668 5' -55.3 NC_004065.1 + 56053 0.67 0.956467
Target:  5'- aGACGACC--UGGUCGUCAgCCG-Cg -3'
miRNA:   3'- cCUGCUGGcaGCCAGCAGUaGGCuGa -5'
15668 5' -55.3 NC_004065.1 + 57585 0.67 0.963309
Target:  5'- aGA--GCCG-CGGUCGUCG-CCGGCa -3'
miRNA:   3'- cCUgcUGGCaGCCAGCAGUaGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 68628 0.68 0.948804
Target:  5'- cGGCGAUCuucgccUCGGUCGUCGUCUGuuCUc -3'
miRNA:   3'- cCUGCUGGc-----AGCCAGCAGUAGGCu-GA- -5'
15668 5' -55.3 NC_004065.1 + 76747 0.71 0.856746
Target:  5'- cGGGCGcggcGCCGgCGGccUCGUCAucgUCCGGCg -3'
miRNA:   3'- -CCUGC----UGGCaGCC--AGCAGU---AGGCUGa -5'
15668 5' -55.3 NC_004065.1 + 79169 0.66 0.979271
Target:  5'- cGACG-CCGUCGGcagucUCGUCGUCUc--- -3'
miRNA:   3'- cCUGCuGGCAGCC-----AGCAGUAGGcuga -5'
15668 5' -55.3 NC_004065.1 + 89174 0.68 0.944656
Target:  5'- cGACGGCCGcUCGcUCGUC-UCCGuCa -3'
miRNA:   3'- cCUGCUGGC-AGCcAGCAGuAGGCuGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.