miRNA display CGI


Results 1 - 20 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15669 3' -56.3 NC_004065.1 + 67026 0.66 0.964536
Target:  5'- -gUCGGCgcagCGGCGGCG---CCGGcGCCu -3'
miRNA:   3'- cgAGCUGa---GCCGCCGUuagGGUC-UGG- -5'
15669 3' -56.3 NC_004065.1 + 224855 0.66 0.964536
Target:  5'- --cCGACggucugCGGUGGCAGUuugagccaUCCGGACg -3'
miRNA:   3'- cgaGCUGa-----GCCGCCGUUA--------GGGUCUGg -5'
15669 3' -56.3 NC_004065.1 + 139002 0.66 0.964536
Target:  5'- aGCUCGGgaCGGUGGCca---UGGACCg -3'
miRNA:   3'- -CGAGCUgaGCCGCCGuuaggGUCUGG- -5'
15669 3' -56.3 NC_004065.1 + 102117 0.66 0.964536
Target:  5'- -gUCGuCUgCGGCGGCGAUagcgcCCCcGACg -3'
miRNA:   3'- cgAGCuGA-GCCGCCGUUA-----GGGuCUGg -5'
15669 3' -56.3 NC_004065.1 + 37280 0.66 0.96227
Target:  5'- cGgUCGACUCucuggcgGGCGGUAGcggucuuuauaaggcUUCgGGACCg -3'
miRNA:   3'- -CgAGCUGAG-------CCGCCGUU---------------AGGgUCUGG- -5'
15669 3' -56.3 NC_004065.1 + 100111 0.66 0.961269
Target:  5'- cCUCG-CaCGGCGGCGAUCggggcgCAGACg -3'
miRNA:   3'- cGAGCuGaGCCGCCGUUAGg-----GUCUGg -5'
15669 3' -56.3 NC_004065.1 + 18067 0.66 0.961269
Target:  5'- uCUCGACgauGGCGGCAGcgaccgCCgCAG-CCu -3'
miRNA:   3'- cGAGCUGag-CCGCCGUUa-----GG-GUCuGG- -5'
15669 3' -56.3 NC_004065.1 + 150228 0.66 0.961269
Target:  5'- ---gGACUCGGUGGagucuuUCCUgcaGGACCu -3'
miRNA:   3'- cgagCUGAGCCGCCguu---AGGG---UCUGG- -5'
15669 3' -56.3 NC_004065.1 + 98793 0.66 0.961269
Target:  5'- uGCcgCGACg-GGCGGCGucUCCC-GACg -3'
miRNA:   3'- -CGa-GCUGagCCGCCGUu-AGGGuCUGg -5'
15669 3' -56.3 NC_004065.1 + 50541 0.66 0.961269
Target:  5'- -aUCGcCgcgCGGaCGGCGGUCUCGGgGCCc -3'
miRNA:   3'- cgAGCuGa--GCC-GCCGUUAGGGUC-UGG- -5'
15669 3' -56.3 NC_004065.1 + 200240 0.66 0.961269
Target:  5'- aGCUgGuggcggaguuCUCGGCGcuCGAUCCCAGAg- -3'
miRNA:   3'- -CGAgCu---------GAGCCGCc-GUUAGGGUCUgg -5'
15669 3' -56.3 NC_004065.1 + 34958 0.66 0.960931
Target:  5'- aGCUCGAggucuucgugcucCUgGGCGGCg--CCCGcgucuugaagguGGCCa -3'
miRNA:   3'- -CGAGCU-------------GAgCCGCCGuuaGGGU------------CUGG- -5'
15669 3' -56.3 NC_004065.1 + 47291 0.66 0.960591
Target:  5'- --aCGugUCGGUGGCcccggcgucgCCCgugAGGCCg -3'
miRNA:   3'- cgaGCugAGCCGCCGuua-------GGG---UCUGG- -5'
15669 3' -56.3 NC_004065.1 + 52801 0.66 0.959212
Target:  5'- cGCUCGGCgggggcgcaCGGCGGgGccgccgggggucaguAUCCCuuGCCu -3'
miRNA:   3'- -CGAGCUGa--------GCCGCCgU---------------UAGGGucUGG- -5'
15669 3' -56.3 NC_004065.1 + 164149 0.66 0.957799
Target:  5'- -aUCGACagUGGUacugcuccuaGGCGGUUCCAGAUCc -3'
miRNA:   3'- cgAGCUGa-GCCG----------CCGUUAGGGUCUGG- -5'
15669 3' -56.3 NC_004065.1 + 161744 0.66 0.957799
Target:  5'- gGC-CGAggaggCGGCGGCGgaggugacggcGUCCCgaAGGCCc -3'
miRNA:   3'- -CGaGCUga---GCCGCCGU-----------UAGGG--UCUGG- -5'
15669 3' -56.3 NC_004065.1 + 170515 0.66 0.957799
Target:  5'- gGC-CGAUgguggCGGCGGCGG--CCAcGGCCa -3'
miRNA:   3'- -CGaGCUGa----GCCGCCGUUagGGU-CUGG- -5'
15669 3' -56.3 NC_004065.1 + 185102 0.66 0.957799
Target:  5'- cGCUCGACUCGaucccuCGGCcGAaCCCAG-Ca -3'
miRNA:   3'- -CGAGCUGAGCc-----GCCG-UUaGGGUCuGg -5'
15669 3' -56.3 NC_004065.1 + 67126 0.66 0.957799
Target:  5'- uGCUgGACagCGGCGcgcgccuggacGCGAUCgCGGACg -3'
miRNA:   3'- -CGAgCUGa-GCCGC-----------CGUUAGgGUCUGg -5'
15669 3' -56.3 NC_004065.1 + 201890 0.66 0.957799
Target:  5'- cGCagaGGC-CGaUGGC-GUCCCAGACCg -3'
miRNA:   3'- -CGag-CUGaGCcGCCGuUAGGGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.