miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15669 5' -54.5 NC_004065.1 + 157708 0.66 0.983918
Target:  5'- gGUGAUCAcCGuCGGGAcCGCgGUCGcGGCGa -3'
miRNA:   3'- -CACUAGU-GC-GCCCUaGCG-CGGU-UUGC- -5'
15669 5' -54.5 NC_004065.1 + 22338 0.66 0.983918
Target:  5'- aUGAUCuucggaGCGCGcGGGUUGgGCCGccGCGa -3'
miRNA:   3'- cACUAG------UGCGC-CCUAGCgCGGUu-UGC- -5'
15669 5' -54.5 NC_004065.1 + 36649 0.66 0.982031
Target:  5'- -aGAUCAaCGuCGGcGAUCGCGCauauaUAGACa -3'
miRNA:   3'- caCUAGU-GC-GCC-CUAGCGCG-----GUUUGc -5'
15669 5' -54.5 NC_004065.1 + 67406 0.66 0.982031
Target:  5'- gGUGAUCgugGCGCGGGGg-GCGaCCu-ACGu -3'
miRNA:   3'- -CACUAG---UGCGCCCUagCGC-GGuuUGC- -5'
15669 5' -54.5 NC_004065.1 + 92542 0.66 0.982031
Target:  5'- -cGggCGgGCGGGcgCGCGCaCGcGCGc -3'
miRNA:   3'- caCuaGUgCGCCCuaGCGCG-GUuUGC- -5'
15669 5' -54.5 NC_004065.1 + 108889 0.66 0.982031
Target:  5'- -aGAUgCGCGUGGaGUCGCGCagcuGGCGc -3'
miRNA:   3'- caCUA-GUGCGCCcUAGCGCGgu--UUGC- -5'
15669 5' -54.5 NC_004065.1 + 142754 0.66 0.982031
Target:  5'- gGUG-UCgACGCGcaGcgCGUGCCAGACGg -3'
miRNA:   3'- -CACuAG-UGCGCc-CuaGCGCGGUUUGC- -5'
15669 5' -54.5 NC_004065.1 + 142641 0.66 0.979981
Target:  5'- -cGAUCGCGCaggugcucaGGGAguUCGUGgCCGAGgGg -3'
miRNA:   3'- caCUAGUGCG---------CCCU--AGCGC-GGUUUgC- -5'
15669 5' -54.5 NC_004065.1 + 193252 0.66 0.979981
Target:  5'- aUGAUUACcauaacUGGGAUUuCGCCAAGCGc -3'
miRNA:   3'- cACUAGUGc-----GCCCUAGcGCGGUUUGC- -5'
15669 5' -54.5 NC_004065.1 + 174851 0.66 0.979981
Target:  5'- gGUGGUgGCGUgcuuccuagcgGGGGUCGcCGCC--GCGa -3'
miRNA:   3'- -CACUAgUGCG-----------CCCUAGC-GCGGuuUGC- -5'
15669 5' -54.5 NC_004065.1 + 125104 0.66 0.979981
Target:  5'- --cGUgGCGCGGauGAUCGCGauggaCCAGGCGg -3'
miRNA:   3'- cacUAgUGCGCC--CUAGCGC-----GGUUUGC- -5'
15669 5' -54.5 NC_004065.1 + 36811 0.66 0.979981
Target:  5'- aUGGUCAacuuCGCGG----GCGCCGGACGg -3'
miRNA:   3'- cACUAGU----GCGCCcuagCGCGGUUUGC- -5'
15669 5' -54.5 NC_004065.1 + 17819 0.66 0.979333
Target:  5'- cGUGAUCACcccguuuuccacagGUcuGGGAUUGCcGCCGAGuCGa -3'
miRNA:   3'- -CACUAGUG--------------CG--CCCUAGCG-CGGUUU-GC- -5'
15669 5' -54.5 NC_004065.1 + 143496 0.66 0.977992
Target:  5'- -gGGUgACGCGGGuuagcgaagacgggCGCGgCGAACGc -3'
miRNA:   3'- caCUAgUGCGCCCua------------GCGCgGUUUGC- -5'
15669 5' -54.5 NC_004065.1 + 68732 0.66 0.977762
Target:  5'- -cGcAUCcUGaCGGGGUCGCuGCCGGACu -3'
miRNA:   3'- caC-UAGuGC-GCCCUAGCG-CGGUUUGc -5'
15669 5' -54.5 NC_004065.1 + 228982 0.66 0.977063
Target:  5'- -cGAUC-CGCgacacgaacggcgaGGGAgCGCGCgGAGCGa -3'
miRNA:   3'- caCUAGuGCG--------------CCCUaGCGCGgUUUGC- -5'
15669 5' -54.5 NC_004065.1 + 98525 0.66 0.975367
Target:  5'- -gGAUC-CGCGaGGcgCGCGCCcaGGGCc -3'
miRNA:   3'- caCUAGuGCGC-CCuaGCGCGG--UUUGc -5'
15669 5' -54.5 NC_004065.1 + 229524 0.66 0.975367
Target:  5'- cGUGccgCGuCGCGGGuUCGCGCUcGACc -3'
miRNA:   3'- -CACua-GU-GCGCCCuAGCGCGGuUUGc -5'
15669 5' -54.5 NC_004065.1 + 17939 0.66 0.972789
Target:  5'- -aGGU-ACGaUGGGGUCGCaggucGCCGGACGg -3'
miRNA:   3'- caCUAgUGC-GCCCUAGCG-----CGGUUUGC- -5'
15669 5' -54.5 NC_004065.1 + 151080 0.66 0.972789
Target:  5'- -gGAUCccuGCGCGGGccugGUgGCGcCCGAGCu -3'
miRNA:   3'- caCUAG---UGCGCCC----UAgCGC-GGUUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.