miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 3' -61.4 NC_001347.2 + 118455 0.66 0.82034
Target:  5'- --aCGCUccagacUUGaCCGCCACCGC-GCGGc -3'
miRNA:   3'- gcaGCGAc-----AGC-GGCGGUGGCGuCGCC- -5'
1567 3' -61.4 NC_001347.2 + 159442 0.66 0.817944
Target:  5'- cCGUCGUcGUCugcgGCCGCgGCCGCucgaugacgaugucGGCGcGg -3'
miRNA:   3'- -GCAGCGaCAG----CGGCGgUGGCG--------------UCGC-C- -5'
1567 3' -61.4 NC_001347.2 + 141820 0.66 0.812303
Target:  5'- cCGgCGCccaUgGCCGCCACUGUGGCGc -3'
miRNA:   3'- -GCaGCGac-AgCGGCGGUGGCGUCGCc -5'
1567 3' -61.4 NC_001347.2 + 222750 0.66 0.812303
Target:  5'- --cCGCUGccgcggccaUUGCCGCCGCCGCccauaccaucGGCa- -3'
miRNA:   3'- gcaGCGAC---------AGCGGCGGUGGCG----------UCGcc -5'
1567 3' -61.4 NC_001347.2 + 1361 0.66 0.812303
Target:  5'- gCGUCaaCUGUCGCCGCgGgaCGC-GUGGa -3'
miRNA:   3'- -GCAGc-GACAGCGGCGgUg-GCGuCGCC- -5'
1567 3' -61.4 NC_001347.2 + 63255 0.66 0.811491
Target:  5'- --cCGCUG-CGCCcgccgugGCCACCaaCGGCGGu -3'
miRNA:   3'- gcaGCGACaGCGG-------CGGUGGc-GUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 135482 0.66 0.804125
Target:  5'- cCGUCGCgGUCGaccCCGCUcCCGgAGCu- -3'
miRNA:   3'- -GCAGCGaCAGC---GGCGGuGGCgUCGcc -5'
1567 3' -61.4 NC_001347.2 + 39073 0.66 0.804125
Target:  5'- cCGUCGCgcccaCGCCGUucaucuggCugCGCGGCGu -3'
miRNA:   3'- -GCAGCGaca--GCGGCG--------GugGCGUCGCc -5'
1567 3' -61.4 NC_001347.2 + 184226 0.66 0.804125
Target:  5'- gGUCGCUagcguGUCGCagcguuCGCCGCCGUuGCc- -3'
miRNA:   3'- gCAGCGA-----CAGCG------GCGGUGGCGuCGcc -5'
1567 3' -61.4 NC_001347.2 + 105556 0.66 0.804125
Target:  5'- gCGU-GCUGcCGCCGCUcuuccacggACCGCuGGCGc -3'
miRNA:   3'- -GCAgCGACaGCGGCGG---------UGGCG-UCGCc -5'
1567 3' -61.4 NC_001347.2 + 77050 0.66 0.8033
Target:  5'- aCG-CGCg--UGCCGCCggccucggacgaaGCgGCAGCGGc -3'
miRNA:   3'- -GCaGCGacaGCGGCGG-------------UGgCGUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 97707 0.66 0.795813
Target:  5'- -cUCGCaucaccGUCG-CGCCACCGUAGCc- -3'
miRNA:   3'- gcAGCGa-----CAGCgGCGGUGGCGUCGcc -5'
1567 3' -61.4 NC_001347.2 + 192117 0.66 0.795813
Target:  5'- -aUCug-GUCGCCGCCACCGCcgucguuGCcGGu -3'
miRNA:   3'- gcAGcgaCAGCGGCGGUGGCGu------CG-CC- -5'
1567 3' -61.4 NC_001347.2 + 193655 0.66 0.795813
Target:  5'- ---aGCUGU-GCCGCCGCuCGCGcgccuccgcucGCGGc -3'
miRNA:   3'- gcagCGACAgCGGCGGUG-GCGU-----------CGCC- -5'
1567 3' -61.4 NC_001347.2 + 87638 0.66 0.795813
Target:  5'- --cUGCUGUUGCuCGCCagcgGCgCGCGuGCGGa -3'
miRNA:   3'- gcaGCGACAGCG-GCGG----UG-GCGU-CGCC- -5'
1567 3' -61.4 NC_001347.2 + 88355 0.66 0.794974
Target:  5'- uCGcCGCUGgCGgCGCUGCCGCGagacgacGUGGa -3'
miRNA:   3'- -GCaGCGACaGCgGCGGUGGCGU-------CGCC- -5'
1567 3' -61.4 NC_001347.2 + 154931 0.66 0.787373
Target:  5'- aCGUUGCUacUGCCGgcgacggcuCCGCCGCAGCu- -3'
miRNA:   3'- -GCAGCGAcaGCGGC---------GGUGGCGUCGcc -5'
1567 3' -61.4 NC_001347.2 + 85340 0.66 0.778813
Target:  5'- cCGcCGCcagCGCCGUCGCCcGCGGCu- -3'
miRNA:   3'- -GCaGCGacaGCGGCGGUGG-CGUCGcc -5'
1567 3' -61.4 NC_001347.2 + 86303 0.66 0.778813
Target:  5'- uGUCGCgcagacccucGUCGCgaGCCAgCGCGGCc- -3'
miRNA:   3'- gCAGCGa---------CAGCGg-CGGUgGCGUCGcc -5'
1567 3' -61.4 NC_001347.2 + 208090 0.67 0.77014
Target:  5'- --cCGCUGcCGCagauggGCgCACCGaCGGCGGa -3'
miRNA:   3'- gcaGCGACaGCGg-----CG-GUGGC-GUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.