miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 3' -61.4 NC_001347.2 + 191968 1.09 0.001877
Target:  5'- uCGUCGCUGUCGCCGCCACCGCAGCGGc -3'
miRNA:   3'- -GCAGCGACAGCGGCGGUGGCGUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 228699 0.85 0.079074
Target:  5'- aGUCGCUugcgcugucggcccaGUCGCCaCCGCCGCGGCGGa -3'
miRNA:   3'- gCAGCGA---------------CAGCGGcGGUGGCGUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 199487 0.78 0.211383
Target:  5'- uGUCGCUGUCGCagaaggaaaacucauCGCCcuCgGCAGCGGa -3'
miRNA:   3'- gCAGCGACAGCG---------------GCGGu-GgCGUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 131732 0.76 0.28021
Target:  5'- ---gGCcGUCGCCGCCGCCGCGGUu- -3'
miRNA:   3'- gcagCGaCAGCGGCGGUGGCGUCGcc -5'
1567 3' -61.4 NC_001347.2 + 78409 0.76 0.274151
Target:  5'- aCGUCgggcuGCUGcCGCCGCCACCcggccCGGCGGc -3'
miRNA:   3'- -GCAG-----CGACaGCGGCGGUGGc----GUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 174256 0.75 0.325607
Target:  5'- gCGUCG--GUCGCCGCCuCCGCGGCc- -3'
miRNA:   3'- -GCAGCgaCAGCGGCGGuGGCGUCGcc -5'
1567 3' -61.4 NC_001347.2 + 208059 0.75 0.332521
Target:  5'- gCGuUCGUUGgCGCCGCUGCCGCGuCGGg -3'
miRNA:   3'- -GC-AGCGACaGCGGCGGUGGCGUcGCC- -5'
1567 3' -61.4 NC_001347.2 + 156642 0.75 0.312765
Target:  5'- gCGcCGCUGccgggccucggccgcCGCCGCCACCcaugGCGGCGGg -3'
miRNA:   3'- -GCaGCGACa--------------GCGGCGGUGG----CGUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 222810 0.74 0.368693
Target:  5'- ---aGCUGUCuUCGCCGCCGCAGCu- -3'
miRNA:   3'- gcagCGACAGcGGCGGUGGCGUCGcc -5'
1567 3' -61.4 NC_001347.2 + 168330 0.74 0.376243
Target:  5'- gCGUUGUUacuggcgaucaaGUcCGCCGCCGCCGCGGUGc -3'
miRNA:   3'- -GCAGCGA------------CA-GCGGCGGUGGCGUCGCc -5'
1567 3' -61.4 NC_001347.2 + 20315 0.74 0.368693
Target:  5'- --aCGacgGUCGCUGCCACaGCAGCGGc -3'
miRNA:   3'- gcaGCga-CAGCGGCGGUGgCGUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 165120 0.74 0.376243
Target:  5'- gGUCGUUGUCGCUGCCGuguCCGCGcuuucuCGGa -3'
miRNA:   3'- gCAGCGACAGCGGCGGU---GGCGUc-----GCC- -5'
1567 3' -61.4 NC_001347.2 + 128124 0.73 0.430274
Target:  5'- gCGUUGCcccUGUCGCCGCCGCCacgcgucauucuCAGCGu -3'
miRNA:   3'- -GCAGCG---ACAGCGGCGGUGGc-----------GUCGCc -5'
1567 3' -61.4 NC_001347.2 + 178885 0.73 0.407472
Target:  5'- uGUC-CUcGUCGCCGCCGCUGCcGCcGGu -3'
miRNA:   3'- gCAGcGA-CAGCGGCGGUGGCGuCG-CC- -5'
1567 3' -61.4 NC_001347.2 + 68177 0.73 0.423683
Target:  5'- cCGUCGCgagucccGcCGCUGCCACC-CAGCGa -3'
miRNA:   3'- -GCAGCGa------CaGCGGCGGUGGcGUCGCc -5'
1567 3' -61.4 NC_001347.2 + 100939 0.73 0.407472
Target:  5'- uCG-CGCUcaCGCCGCCGCCGCGaUGGa -3'
miRNA:   3'- -GCaGCGAcaGCGGCGGUGGCGUcGCC- -5'
1567 3' -61.4 NC_001347.2 + 85403 0.73 0.407472
Target:  5'- cCGUCGCUGUUGUCGUCACUcaGguGCu- -3'
miRNA:   3'- -GCAGCGACAGCGGCGGUGG--CguCGcc -5'
1567 3' -61.4 NC_001347.2 + 16698 0.72 0.440274
Target:  5'- aGUCGCaucUGgaccgcUCGCCGCCcCUGCAGCGu -3'
miRNA:   3'- gCAGCG---AC------AGCGGCGGuGGCGUCGCc -5'
1567 3' -61.4 NC_001347.2 + 152377 0.72 0.448707
Target:  5'- uGggGCUG-CGUCGCCugCGaCGGCGGg -3'
miRNA:   3'- gCagCGACaGCGGCGGugGC-GUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 199597 0.72 0.474527
Target:  5'- cCG-CGCUGcuguuaUCGUCGCCACCGCcGcCGGc -3'
miRNA:   3'- -GCaGCGAC------AGCGGCGGUGGCGuC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.