Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
1567 | 3' | -61.4 | NC_001347.2 | + | 191968 | 1.09 | 0.001877 |
Target: 5'- uCGUCGCUGUCGCCGCCACCGCAGCGGc -3' miRNA: 3'- -GCAGCGACAGCGGCGGUGGCGUCGCC- -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 228699 | 0.85 | 0.079074 |
Target: 5'- aGUCGCUugcgcugucggcccaGUCGCCaCCGCCGCGGCGGa -3' miRNA: 3'- gCAGCGA---------------CAGCGGcGGUGGCGUCGCC- -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 199487 | 0.78 | 0.211383 |
Target: 5'- uGUCGCUGUCGCagaaggaaaacucauCGCCcuCgGCAGCGGa -3' miRNA: 3'- gCAGCGACAGCG---------------GCGGu-GgCGUCGCC- -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 78409 | 0.76 | 0.274151 |
Target: 5'- aCGUCgggcuGCUGcCGCCGCCACCcggccCGGCGGc -3' miRNA: 3'- -GCAG-----CGACaGCGGCGGUGGc----GUCGCC- -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 131732 | 0.76 | 0.28021 |
Target: 5'- ---gGCcGUCGCCGCCGCCGCGGUu- -3' miRNA: 3'- gcagCGaCAGCGGCGGUGGCGUCGcc -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 156642 | 0.75 | 0.312765 |
Target: 5'- gCGcCGCUGccgggccucggccgcCGCCGCCACCcaugGCGGCGGg -3' miRNA: 3'- -GCaGCGACa--------------GCGGCGGUGG----CGUCGCC- -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 174256 | 0.75 | 0.325607 |
Target: 5'- gCGUCG--GUCGCCGCCuCCGCGGCc- -3' miRNA: 3'- -GCAGCgaCAGCGGCGGuGGCGUCGcc -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 208059 | 0.75 | 0.332521 |
Target: 5'- gCGuUCGUUGgCGCCGCUGCCGCGuCGGg -3' miRNA: 3'- -GC-AGCGACaGCGGCGGUGGCGUcGCC- -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 222810 | 0.74 | 0.368693 |
Target: 5'- ---aGCUGUCuUCGCCGCCGCAGCu- -3' miRNA: 3'- gcagCGACAGcGGCGGUGGCGUCGcc -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 20315 | 0.74 | 0.368693 |
Target: 5'- --aCGacgGUCGCUGCCACaGCAGCGGc -3' miRNA: 3'- gcaGCga-CAGCGGCGGUGgCGUCGCC- -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 168330 | 0.74 | 0.376243 |
Target: 5'- gCGUUGUUacuggcgaucaaGUcCGCCGCCGCCGCGGUGc -3' miRNA: 3'- -GCAGCGA------------CA-GCGGCGGUGGCGUCGCc -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 165120 | 0.74 | 0.376243 |
Target: 5'- gGUCGUUGUCGCUGCCGuguCCGCGcuuucuCGGa -3' miRNA: 3'- gCAGCGACAGCGGCGGU---GGCGUc-----GCC- -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 178885 | 0.73 | 0.407472 |
Target: 5'- uGUC-CUcGUCGCCGCCGCUGCcGCcGGu -3' miRNA: 3'- gCAGcGA-CAGCGGCGGUGGCGuCG-CC- -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 85403 | 0.73 | 0.407472 |
Target: 5'- cCGUCGCUGUUGUCGUCACUcaGguGCu- -3' miRNA: 3'- -GCAGCGACAGCGGCGGUGG--CguCGcc -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 100939 | 0.73 | 0.407472 |
Target: 5'- uCG-CGCUcaCGCCGCCGCCGCGaUGGa -3' miRNA: 3'- -GCaGCGAcaGCGGCGGUGGCGUcGCC- -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 68177 | 0.73 | 0.423683 |
Target: 5'- cCGUCGCgagucccGcCGCUGCCACC-CAGCGa -3' miRNA: 3'- -GCAGCGa------CaGCGGCGGUGGcGUCGCc -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 128124 | 0.73 | 0.430274 |
Target: 5'- gCGUUGCcccUGUCGCCGCCGCCacgcgucauucuCAGCGu -3' miRNA: 3'- -GCAGCG---ACAGCGGCGGUGGc-----------GUCGCc -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 16698 | 0.72 | 0.440274 |
Target: 5'- aGUCGCaucUGgaccgcUCGCCGCCcCUGCAGCGu -3' miRNA: 3'- gCAGCG---AC------AGCGGCGGuGGCGUCGCc -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 152377 | 0.72 | 0.448707 |
Target: 5'- uGggGCUG-CGUCGCCugCGaCGGCGGg -3' miRNA: 3'- gCagCGACaGCGGCGGugGC-GUCGCC- -5' |
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1567 | 3' | -61.4 | NC_001347.2 | + | 63108 | 0.72 | 0.465836 |
Target: 5'- cCGUgGCcGcCGCgGCCGCCGCuGUGGc -3' miRNA: 3'- -GCAgCGaCaGCGgCGGUGGCGuCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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