miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 3' -61.4 NC_001347.2 + 208090 0.67 0.77014
Target:  5'- --cCGCUGcCGCagauggGCgCACCGaCGGCGGa -3'
miRNA:   3'- gcaGCGACaGCGg-----CG-GUGGC-GUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 152716 0.67 0.77014
Target:  5'- gCGUgaCGCUGuagucuUCGCgCGCCGCCGUgAGCa- -3'
miRNA:   3'- -GCA--GCGAC------AGCG-GCGGUGGCG-UCGcc -5'
1567 3' -61.4 NC_001347.2 + 2070 0.67 0.762243
Target:  5'- gGUcCGCUGUaccugugccuccgcaGCCGUacggCGCCGCcGGCGGg -3'
miRNA:   3'- gCA-GCGACAg--------------CGGCG----GUGGCG-UCGCC- -5'
1567 3' -61.4 NC_001347.2 + 97898 0.67 0.761361
Target:  5'- aCGUCGUcuUCGgCGUCggGCgGCGGCGGu -3'
miRNA:   3'- -GCAGCGacAGCgGCGG--UGgCGUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 38405 0.67 0.761361
Target:  5'- cCGUCuCcGU-GCCGCuCGCCGCuGGCGGc -3'
miRNA:   3'- -GCAGcGaCAgCGGCG-GUGGCG-UCGCC- -5'
1567 3' -61.4 NC_001347.2 + 197237 0.67 0.761361
Target:  5'- gGUCGgaGgucaCGCCaCaugaaGCCGCGGCGGc -3'
miRNA:   3'- gCAGCgaCa---GCGGcGg----UGGCGUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 97668 0.67 0.752483
Target:  5'- uCGUCccuGCUGUCGUCGUCuCCcCGGCGc -3'
miRNA:   3'- -GCAG---CGACAGCGGCGGuGGcGUCGCc -5'
1567 3' -61.4 NC_001347.2 + 41302 0.67 0.752483
Target:  5'- -cUCGCUgacuggaacGUCGUaCGCUGCCGCGGCa- -3'
miRNA:   3'- gcAGCGA---------CAGCG-GCGGUGGCGUCGcc -5'
1567 3' -61.4 NC_001347.2 + 126512 0.67 0.743514
Target:  5'- gCGUaCGCcGUCGCgCGCaACCGCcGCGa -3'
miRNA:   3'- -GCA-GCGaCAGCG-GCGgUGGCGuCGCc -5'
1567 3' -61.4 NC_001347.2 + 39381 0.67 0.743514
Target:  5'- cCGUgGCccggcGUCGUCGUaGCCGCAGCa- -3'
miRNA:   3'- -GCAgCGa----CAGCGGCGgUGGCGUCGcc -5'
1567 3' -61.4 NC_001347.2 + 193124 0.67 0.743514
Target:  5'- gCGUCuuccucCUcGUCGUCGCCGCCGUcGCGc -3'
miRNA:   3'- -GCAGc-----GA-CAGCGGCGGUGGCGuCGCc -5'
1567 3' -61.4 NC_001347.2 + 202325 0.67 0.738091
Target:  5'- aCGggGCUggguggagagggaagGUCG-CGCCGCCGCAGCa- -3'
miRNA:   3'- -GCagCGA---------------CAGCgGCGGUGGCGUCGcc -5'
1567 3' -61.4 NC_001347.2 + 68732 0.67 0.725331
Target:  5'- uCGUCGgaGgcCGUggagcgagUGCCGCCGCAGcCGGc -3'
miRNA:   3'- -GCAGCgaCa-GCG--------GCGGUGGCGUC-GCC- -5'
1567 3' -61.4 NC_001347.2 + 67708 0.67 0.725331
Target:  5'- -cUCGUUcUUGCCGCCGCCGCcauGGCc- -3'
miRNA:   3'- gcAGCGAcAGCGGCGGUGGCG---UCGcc -5'
1567 3' -61.4 NC_001347.2 + 63230 0.67 0.725331
Target:  5'- --aCGCUGUuuaCGCCgGCCuCCGCGGCc- -3'
miRNA:   3'- gcaGCGACA---GCGG-CGGuGGCGUCGcc -5'
1567 3' -61.4 NC_001347.2 + 85987 0.68 0.716132
Target:  5'- cCGcCGCcacccgaacCGuCCGCCGCCGCGGCGc -3'
miRNA:   3'- -GCaGCGaca------GC-GGCGGUGGCGUCGCc -5'
1567 3' -61.4 NC_001347.2 + 37238 0.68 0.716132
Target:  5'- cCGUCGgUGgaaccgUGCCGUUGCUuuggcgGCAGCGGa -3'
miRNA:   3'- -GCAGCgACa-----GCGGCGGUGG------CGUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 169126 0.68 0.716132
Target:  5'- gGcCGCgcgCGCCG-CGCUGCAGUGGc -3'
miRNA:   3'- gCaGCGacaGCGGCgGUGGCGUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 113178 0.68 0.716132
Target:  5'- aCG-CGCgccccaGCCGCCGgCGUGGCGGc -3'
miRNA:   3'- -GCaGCGacag--CGGCGGUgGCGUCGCC- -5'
1567 3' -61.4 NC_001347.2 + 195397 0.68 0.706872
Target:  5'- gCGUCGCU-UCGCCGCCACCu------ -3'
miRNA:   3'- -GCAGCGAcAGCGGCGGUGGcgucgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.