miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 5' -56.6 NC_001347.2 + 228365 0.66 0.947659
Target:  5'- uGCGGUggauguGGCGGgguGCGGCGGuUUCCGa -3'
miRNA:   3'- cUGCCG------CCGCCau-UGUUGUC-GAGGCa -5'
1567 5' -56.6 NC_001347.2 + 205284 0.66 0.943372
Target:  5'- uGACGGgGGCacgcGGUAACcuacgucgaAACAGCUCa-- -3'
miRNA:   3'- -CUGCCgCCG----CCAUUG---------UUGUCGAGgca -5'
1567 5' -56.6 NC_001347.2 + 140588 0.66 0.943372
Target:  5'- uGGCGGgGGUGGUGgacgagacgugaGCGGgGGC-CCGa -3'
miRNA:   3'- -CUGCCgCCGCCAU------------UGUUgUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 2187 0.66 0.943372
Target:  5'- nGACGGUgauGGUGGguuCGACAGCgauggcgggUCCGg -3'
miRNA:   3'- -CUGCCG---CCGCCauuGUUGUCG---------AGGCa -5'
1567 5' -56.6 NC_001347.2 + 99294 0.66 0.938863
Target:  5'- cGACGGCacGGCGcGUAACGcugcACGGCUagaUGUu -3'
miRNA:   3'- -CUGCCG--CCGC-CAUUGU----UGUCGAg--GCA- -5'
1567 5' -56.6 NC_001347.2 + 173581 0.66 0.938863
Target:  5'- aAUGcCGGCGGUcugcauGACGACGGC-CCGg -3'
miRNA:   3'- cUGCcGCCGCCA------UUGUUGUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 184752 0.66 0.934129
Target:  5'- cGCGGUGGCGcucguGUGGCAGCAggGCUaCCa- -3'
miRNA:   3'- cUGCCGCCGC-----CAUUGUUGU--CGA-GGca -5'
1567 5' -56.6 NC_001347.2 + 98053 0.66 0.934129
Target:  5'- cGCGGCGGCaGcGGCcGCGGCUUCc- -3'
miRNA:   3'- cUGCCGCCGcCaUUGuUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 182234 0.66 0.934129
Target:  5'- uGACGuCGGUGGUGGCuguaGGCUaCCGa -3'
miRNA:   3'- -CUGCcGCCGCCAUUGuug-UCGA-GGCa -5'
1567 5' -56.6 NC_001347.2 + 6205 0.66 0.929169
Target:  5'- -cCGGCGGCGa-AACAAcCAGCgCCGg -3'
miRNA:   3'- cuGCCGCCGCcaUUGUU-GUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 81564 0.66 0.923984
Target:  5'- uGGCaGCGGCGGcAACAGcCAGCgacgaucgCCGc -3'
miRNA:   3'- -CUGcCGCCGCCaUUGUU-GUCGa-------GGCa -5'
1567 5' -56.6 NC_001347.2 + 117998 0.66 0.923984
Target:  5'- gGACGacaCGGUGGUugUAGCAGCgUCCGc -3'
miRNA:   3'- -CUGCc--GCCGCCAuuGUUGUCG-AGGCa -5'
1567 5' -56.6 NC_001347.2 + 22210 0.67 0.918573
Target:  5'- cACGcGCuGGUGGccgAACAGCAGCUCUu- -3'
miRNA:   3'- cUGC-CG-CCGCCa--UUGUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 88612 0.67 0.912936
Target:  5'- aGCGGCGGCGGccuGC-GCGGC-CUGc -3'
miRNA:   3'- cUGCCGCCGCCau-UGuUGUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 78715 0.67 0.912936
Target:  5'- uGGCGGUGGaagacaaccgccUGGUGGcCAACAGCUUCu- -3'
miRNA:   3'- -CUGCCGCC------------GCCAUU-GUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 225559 0.67 0.907076
Target:  5'- gGACGGauggggagaaCGGCGGUGACuuAGCcGC-CCGUg -3'
miRNA:   3'- -CUGCC----------GCCGCCAUUG--UUGuCGaGGCA- -5'
1567 5' -56.6 NC_001347.2 + 173694 0.67 0.907076
Target:  5'- nGCGGUGGCGG---CggUGGUUCCGg -3'
miRNA:   3'- cUGCCGCCGCCauuGuuGUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 37318 0.67 0.900993
Target:  5'- uGGCGGCuuauguuucuggGGUGGgcGCGACGGCaaUUCGUc -3'
miRNA:   3'- -CUGCCG------------CCGCCauUGUUGUCG--AGGCA- -5'
1567 5' -56.6 NC_001347.2 + 153958 0.67 0.900993
Target:  5'- aGACGacGCGGCGGU----ACAGCUCgCGc -3'
miRNA:   3'- -CUGC--CGCCGCCAuuguUGUCGAG-GCa -5'
1567 5' -56.6 NC_001347.2 + 44022 0.67 0.900993
Target:  5'- aACGGauaacGCGGUGGCGACGGCagCGg -3'
miRNA:   3'- cUGCCgc---CGCCAUUGUUGUCGagGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.