miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 5' -56.6 NC_001347.2 + 88612 0.67 0.912936
Target:  5'- aGCGGCGGCGGccuGC-GCGGC-CUGc -3'
miRNA:   3'- cUGCCGCCGCCau-UGuUGUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 78715 0.67 0.912936
Target:  5'- uGGCGGUGGaagacaaccgccUGGUGGcCAACAGCUUCu- -3'
miRNA:   3'- -CUGCCGCC------------GCCAUU-GUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 173694 0.67 0.907076
Target:  5'- nGCGGUGGCGG---CggUGGUUCCGg -3'
miRNA:   3'- cUGCCGCCGCCauuGuuGUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 59077 0.68 0.852459
Target:  5'- cGCGGCGGUuuuGGUGGCG-CGGcCUCCu- -3'
miRNA:   3'- cUGCCGCCG---CCAUUGUuGUC-GAGGca -5'
1567 5' -56.6 NC_001347.2 + 47080 0.68 0.860001
Target:  5'- uGCGGCGGCGaa---GACAGCUgCGa -3'
miRNA:   3'- cUGCCGCCGCcauugUUGUCGAgGCa -5'
1567 5' -56.6 NC_001347.2 + 66517 0.68 0.860001
Target:  5'- --aGGCGGCGGcGAUcGCAGcCUCCu- -3'
miRNA:   3'- cugCCGCCGCCaUUGuUGUC-GAGGca -5'
1567 5' -56.6 NC_001347.2 + 51428 0.68 0.860001
Target:  5'- uGAUGGCGGCG---AUAugGGCUCgCGUu -3'
miRNA:   3'- -CUGCCGCCGCcauUGUugUCGAG-GCA- -5'
1567 5' -56.6 NC_001347.2 + 76620 0.68 0.860001
Target:  5'- aGGCGGCGGCuGcGGCcGCGGCggaggCCGa -3'
miRNA:   3'- -CUGCCGCCGcCaUUGuUGUCGa----GGCa -5'
1567 5' -56.6 NC_001347.2 + 197558 0.68 0.860001
Target:  5'- -cCGGCguGGCGGccGACGGCAGCgugCUGUg -3'
miRNA:   3'- cuGCCG--CCGCCa-UUGUUGUCGa--GGCA- -5'
1567 5' -56.6 NC_001347.2 + 2140 0.68 0.862963
Target:  5'- gGACGcgcacGCGGUGGUcggggcggacgcggcAGCAGCAGCggcgCCGa -3'
miRNA:   3'- -CUGC-----CGCCGCCA---------------UUGUUGUCGa---GGCa -5'
1567 5' -56.6 NC_001347.2 + 210493 0.68 0.860001
Target:  5'- aGCGGCGGuCGGUccagguCAACGGCguuucgCCGc -3'
miRNA:   3'- cUGCCGCC-GCCAuu----GUUGUCGa-----GGCa -5'
1567 5' -56.6 NC_001347.2 + 157281 0.68 0.867348
Target:  5'- aGACGuCGGCGGUccuccAGCAGCAGCUg--- -3'
miRNA:   3'- -CUGCcGCCGCCA-----UUGUUGUCGAggca -5'
1567 5' -56.6 NC_001347.2 + 154905 0.68 0.870232
Target:  5'- aGGCGGCcgaagcgccGGCGGguccuacguugcuacUGccgGCGACGGCUCCGc -3'
miRNA:   3'- -CUGCCG---------CCGCC---------------AU---UGUUGUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 156676 0.68 0.881438
Target:  5'- cAUGGCGGCGGgu-CGugGCGGCUgUGUc -3'
miRNA:   3'- cUGCCGCCGCCauuGU--UGUCGAgGCA- -5'
1567 5' -56.6 NC_001347.2 + 7963 0.69 0.812049
Target:  5'- uGACGGUGGCGGcGGCAgaccaACAuGCgCCGa -3'
miRNA:   3'- -CUGCCGCCGCCaUUGU-----UGU-CGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 111999 0.69 0.820469
Target:  5'- uGCGGCGGCuugGGCAGCAGCggCGg -3'
miRNA:   3'- cUGCCGCCGccaUUGUUGUCGagGCa -5'
1567 5' -56.6 NC_001347.2 + 51954 0.69 0.844729
Target:  5'- cGACaGUGGCGGcagcagcccguuUGGCAGCGGUUCCc- -3'
miRNA:   3'- -CUGcCGCCGCC------------AUUGUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 118713 0.7 0.794755
Target:  5'- aGACGGCGaCGGUAcuuuuGCAGCUCgGg -3'
miRNA:   3'- -CUGCCGCcGCCAUugu--UGUCGAGgCa -5'
1567 5' -56.6 NC_001347.2 + 151987 0.7 0.780517
Target:  5'- uGACGGCGGCGGgguagaggagAGCAACAGgagaggaggagagCCGg -3'
miRNA:   3'- -CUGCCGCCGCCa---------UUGUUGUCga-----------GGCa -5'
1567 5' -56.6 NC_001347.2 + 68217 0.7 0.776905
Target:  5'- aGACGGCGgaaGCGGUAGacGCGGCgCCGc -3'
miRNA:   3'- -CUGCCGC---CGCCAUUguUGUCGaGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.