miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 5' -56.6 NC_001347.2 + 60534 0.7 0.758566
Target:  5'- cGCGGCGGCccuguggaaGGUAgauuACGACAGaUCCGUu -3'
miRNA:   3'- cUGCCGCCG---------CCAU----UGUUGUCgAGGCA- -5'
1567 5' -56.6 NC_001347.2 + 68217 0.7 0.776905
Target:  5'- aGACGGCGgaaGCGGUAGacGCGGCgCCGc -3'
miRNA:   3'- -CUGCCGC---CGCCAUUguUGUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 151987 0.7 0.780517
Target:  5'- uGACGGCGGCGGgguagaggagAGCAACAGgagaggaggagagCCGg -3'
miRNA:   3'- -CUGCCGCCGCCa---------UUGUUGUCga-----------GGCa -5'
1567 5' -56.6 NC_001347.2 + 118713 0.7 0.794755
Target:  5'- aGACGGCGaCGGUAcuuuuGCAGCUCgGg -3'
miRNA:   3'- -CUGCCGCcGCCAUugu--UGUCGAGgCa -5'
1567 5' -56.6 NC_001347.2 + 66848 0.7 0.785895
Target:  5'- cGCGGCGGUGGcGACAACGGgUUUa- -3'
miRNA:   3'- cUGCCGCCGCCaUUGUUGUCgAGGca -5'
1567 5' -56.6 NC_001347.2 + 152310 0.71 0.701282
Target:  5'- cGGCGGCGGUGGUGACugggGACGGUgaugaugCUGc -3'
miRNA:   3'- -CUGCCGCCGCCAUUG----UUGUCGa------GGCa -5'
1567 5' -56.6 NC_001347.2 + 214697 0.71 0.720687
Target:  5'- cACGGCGGCG--AACAGCAGCaUCgCGa -3'
miRNA:   3'- cUGCCGCCGCcaUUGUUGUCG-AG-GCa -5'
1567 5' -56.6 NC_001347.2 + 185476 0.71 0.711016
Target:  5'- gGACGGCGuuGUGGcgcGCAGgGGCUCCGa -3'
miRNA:   3'- -CUGCCGC--CGCCau-UGUUgUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 41170 0.71 0.749234
Target:  5'- cGCcGCGGCGGUGGCGACuGggCCGa -3'
miRNA:   3'- cUGcCGCCGCCAUUGUUGuCgaGGCa -5'
1567 5' -56.6 NC_001347.2 + 142590 0.71 0.739804
Target:  5'- cGGgGGCGGCGGggGCAGCGGguuauugCCGg -3'
miRNA:   3'- -CUgCCGCCGCCauUGUUGUCga-----GGCa -5'
1567 5' -56.6 NC_001347.2 + 157437 0.71 0.739804
Target:  5'- aGCGGgaGGCGGUGACGGC-GCUCUu- -3'
miRNA:   3'- cUGCCg-CCGCCAUUGUUGuCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 140537 0.71 0.739804
Target:  5'- gGACGGgGGUuuggacggcaaaGGUGACGACggGGUUCCGg -3'
miRNA:   3'- -CUGCCgCCG------------CCAUUGUUG--UCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 80885 0.71 0.720687
Target:  5'- aAUGGCGGUGaGUGACGacGCAGC-CCGc -3'
miRNA:   3'- cUGCCGCCGC-CAUUGU--UGUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 192053 0.71 0.749234
Target:  5'- cGACGGUGGCGGcGACGacACGGCgaCGg -3'
miRNA:   3'- -CUGCCGCCGCCaUUGU--UGUCGagGCa -5'
1567 5' -56.6 NC_001347.2 + 173738 0.72 0.661879
Target:  5'- uGGCGGCGGCGGUGAuCAcgaccACGGUcuuUCCu- -3'
miRNA:   3'- -CUGCCGCCGCCAUU-GU-----UGUCG---AGGca -5'
1567 5' -56.6 NC_001347.2 + 63824 0.72 0.691494
Target:  5'- aGCGGCGGCGGcGAUGGCGGggCUGg -3'
miRNA:   3'- cUGCCGCCGCCaUUGUUGUCgaGGCa -5'
1567 5' -56.6 NC_001347.2 + 198666 0.73 0.621115
Target:  5'- cGACGGCaGUuguacauagaugaGGUAAC-ACAGCUCCGa -3'
miRNA:   3'- -CUGCCGcCG-------------CCAUUGuUGUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 82718 0.73 0.62211
Target:  5'- -gUGGUGGCGGUGguGCAGCGGCggCUGa -3'
miRNA:   3'- cuGCCGCCGCCAU--UGUUGUCGa-GGCa -5'
1567 5' -56.6 NC_001347.2 + 47129 0.74 0.582453
Target:  5'- gGGCGGCGGCGGcaaUGGCcGCGGCagCGg -3'
miRNA:   3'- -CUGCCGCCGCC---AUUGuUGUCGagGCa -5'
1567 5' -56.6 NC_001347.2 + 1975 0.74 0.533678
Target:  5'- gGACGGCGGCGGgGACGAC-GUcCCGc -3'
miRNA:   3'- -CUGCCGCCGCCaUUGUUGuCGaGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.