miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 5' -56.6 NC_001347.2 + 157437 0.71 0.739804
Target:  5'- aGCGGgaGGCGGUGACGGC-GCUCUu- -3'
miRNA:   3'- cUGCCg-CCGCCAUUGUUGuCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 80885 0.71 0.720687
Target:  5'- aAUGGCGGUGaGUGACGacGCAGC-CCGc -3'
miRNA:   3'- cUGCCGCCGC-CAUUGU--UGUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 185476 0.71 0.711016
Target:  5'- gGACGGCGuuGUGGcgcGCAGgGGCUCCGa -3'
miRNA:   3'- -CUGCCGC--CGCCau-UGUUgUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 192053 0.71 0.749234
Target:  5'- cGACGGUGGCGGcGACGacACGGCgaCGg -3'
miRNA:   3'- -CUGCCGCCGCCaUUGU--UGUCGagGCa -5'
1567 5' -56.6 NC_001347.2 + 140537 0.71 0.739804
Target:  5'- gGACGGgGGUuuggacggcaaaGGUGACGACggGGUUCCGg -3'
miRNA:   3'- -CUGCCgCCG------------CCAUUGUUG--UCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 142590 0.71 0.739804
Target:  5'- cGGgGGCGGCGGggGCAGCGGguuauugCCGg -3'
miRNA:   3'- -CUgCCGCCGCCauUGUUGUCga-----GGCa -5'
1567 5' -56.6 NC_001347.2 + 118713 0.7 0.794755
Target:  5'- aGACGGCGaCGGUAcuuuuGCAGCUCgGg -3'
miRNA:   3'- -CUGCCGCcGCCAUugu--UGUCGAGgCa -5'
1567 5' -56.6 NC_001347.2 + 66848 0.7 0.785895
Target:  5'- cGCGGCGGUGGcGACAACGGgUUUa- -3'
miRNA:   3'- cUGCCGCCGCCaUUGUUGUCgAGGca -5'
1567 5' -56.6 NC_001347.2 + 151987 0.7 0.780517
Target:  5'- uGACGGCGGCGGgguagaggagAGCAACAGgagaggaggagagCCGg -3'
miRNA:   3'- -CUGCCGCCGCCa---------UUGUUGUCga-----------GGCa -5'
1567 5' -56.6 NC_001347.2 + 173831 0.7 0.758566
Target:  5'- gGGCGGCGGCGGaggaggaggaGGCGGCGGUuuggaucgcaacUCCGg -3'
miRNA:   3'- -CUGCCGCCGCCa---------UUGUUGUCG------------AGGCa -5'
1567 5' -56.6 NC_001347.2 + 68217 0.7 0.776905
Target:  5'- aGACGGCGgaaGCGGUAGacGCGGCgCCGc -3'
miRNA:   3'- -CUGCCGC---CGCCAUUguUGUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 173665 0.7 0.758566
Target:  5'- -gUGGCGGCGGUGGCGGCaagaAGCacgaCCGc -3'
miRNA:   3'- cuGCCGCCGCCAUUGUUG----UCGa---GGCa -5'
1567 5' -56.6 NC_001347.2 + 60534 0.7 0.758566
Target:  5'- cGCGGCGGCccuguggaaGGUAgauuACGACAGaUCCGUu -3'
miRNA:   3'- cUGCCGCCG---------CCAU----UGUUGUCgAGGCA- -5'
1567 5' -56.6 NC_001347.2 + 37168 0.7 0.758566
Target:  5'- gGGCGGUGGCGGccuUGGCGGuCGGgUCUGUc -3'
miRNA:   3'- -CUGCCGCCGCC---AUUGUU-GUCgAGGCA- -5'
1567 5' -56.6 NC_001347.2 + 51954 0.69 0.844729
Target:  5'- cGACaGUGGCGGcagcagcccguuUGGCAGCGGUUCCc- -3'
miRNA:   3'- -CUGcCGCCGCC------------AUUGUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 7963 0.69 0.812049
Target:  5'- uGACGGUGGCGGcGGCAgaccaACAuGCgCCGa -3'
miRNA:   3'- -CUGCCGCCGCCaUUGU-----UGU-CGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 111999 0.69 0.820469
Target:  5'- uGCGGCGGCuugGGCAGCAGCggCGg -3'
miRNA:   3'- cUGCCGCCGccaUUGUUGUCGagGCa -5'
1567 5' -56.6 NC_001347.2 + 76620 0.68 0.860001
Target:  5'- aGGCGGCGGCuGcGGCcGCGGCggaggCCGa -3'
miRNA:   3'- -CUGCCGCCGcCaUUGuUGUCGa----GGCa -5'
1567 5' -56.6 NC_001347.2 + 2140 0.68 0.862963
Target:  5'- gGACGcgcacGCGGUGGUcggggcggacgcggcAGCAGCAGCggcgCCGa -3'
miRNA:   3'- -CUGC-----CGCCGCCA---------------UUGUUGUCGa---GGCa -5'
1567 5' -56.6 NC_001347.2 + 197558 0.68 0.860001
Target:  5'- -cCGGCguGGCGGccGACGGCAGCgugCUGUg -3'
miRNA:   3'- cuGCCG--CCGCCa-UUGUUGUCGa--GGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.