miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 5' -56.6 NC_001347.2 + 192002 1.07 0.00497
Target:  5'- gGACGGCGGCGGUAACAACAGCUCCGUg -3'
miRNA:   3'- -CUGCCGCCGCCAUUGUUGUCGAGGCA- -5'
1567 5' -56.6 NC_001347.2 + 173544 0.84 0.166321
Target:  5'- cGGCGGCGGUGGUGGCGGCAGcCUCUc- -3'
miRNA:   3'- -CUGCCGCCGCCAUUGUUGUC-GAGGca -5'
1567 5' -56.6 NC_001347.2 + 106238 0.82 0.222492
Target:  5'- aGGCGGCGGCGGUGGCGuugGCAGCaauagcagCCGa -3'
miRNA:   3'- -CUGCCGCCGCCAUUGU---UGUCGa-------GGCa -5'
1567 5' -56.6 NC_001347.2 + 115790 0.79 0.314492
Target:  5'- aGCGGCGGUGGgcACAGCGGCUaCGa -3'
miRNA:   3'- cUGCCGCCGCCauUGUUGUCGAgGCa -5'
1567 5' -56.6 NC_001347.2 + 158734 0.79 0.321552
Target:  5'- aGGCGcGCGGCGGUuuAGCAGCGGCUUCc- -3'
miRNA:   3'- -CUGC-CGCCGCCA--UUGUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 97915 0.78 0.336026
Target:  5'- gGGCGGCGGCGGUAACAcACGGCg---- -3'
miRNA:   3'- -CUGCCGCCGCCAUUGU-UGUCGaggca -5'
1567 5' -56.6 NC_001347.2 + 143000 0.78 0.361709
Target:  5'- cGGCGGCGGCGGUgguggaggagguugcGccgcaagcggcgGCAACAGCUUCGg -3'
miRNA:   3'- -CUGCCGCCGCCA---------------U------------UGUUGUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 150633 0.76 0.450111
Target:  5'- cGGCGcCGGCGGUAcuGCGGCGGUUUCGUa -3'
miRNA:   3'- -CUGCcGCCGCCAU--UGUUGUCGAGGCA- -5'
1567 5' -56.6 NC_001347.2 + 75410 0.75 0.477219
Target:  5'- aGCGGCGGCcGUGGCGGCGGCagCGg -3'
miRNA:   3'- cUGCCGCCGcCAUUGUUGUCGagGCa -5'
1567 5' -56.6 NC_001347.2 + 185316 0.75 0.486433
Target:  5'- cGACGGCgguggGGCGGUAAUAguAUAGgUCCGUg -3'
miRNA:   3'- -CUGCCG-----CCGCCAUUGU--UGUCgAGGCA- -5'
1567 5' -56.6 NC_001347.2 + 66788 0.75 0.524087
Target:  5'- cGACGGUGGUGGcGGCGGCGGCaguggagCCGa -3'
miRNA:   3'- -CUGCCGCCGCCaUUGUUGUCGa------GGCa -5'
1567 5' -56.6 NC_001347.2 + 1975 0.74 0.533678
Target:  5'- gGACGGCGGCGGgGACGAC-GUcCCGc -3'
miRNA:   3'- -CUGCCGCCGCCaUUGUUGuCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 47129 0.74 0.582453
Target:  5'- gGGCGGCGGCGGcaaUGGCcGCGGCagCGg -3'
miRNA:   3'- -CUGCCGCCGCC---AUUGuUGUCGagGCa -5'
1567 5' -56.6 NC_001347.2 + 198666 0.73 0.621115
Target:  5'- cGACGGCaGUuguacauagaugaGGUAAC-ACAGCUCCGa -3'
miRNA:   3'- -CUGCCGcCG-------------CCAUUGuUGUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 82718 0.73 0.62211
Target:  5'- -gUGGUGGCGGUGguGCAGCGGCggCUGa -3'
miRNA:   3'- cuGCCGCCGCCAU--UGUUGUCGa-GGCa -5'
1567 5' -56.6 NC_001347.2 + 173738 0.72 0.661879
Target:  5'- uGGCGGCGGCGGUGAuCAcgaccACGGUcuuUCCu- -3'
miRNA:   3'- -CUGCCGCCGCCAUU-GU-----UGUCG---AGGca -5'
1567 5' -56.6 NC_001347.2 + 63824 0.72 0.691494
Target:  5'- aGCGGCGGCGGcGAUGGCGGggCUGg -3'
miRNA:   3'- cUGCCGCCGCCaUUGUUGUCgaGGCa -5'
1567 5' -56.6 NC_001347.2 + 152310 0.71 0.701282
Target:  5'- cGGCGGCGGUGGUGACugggGACGGUgaugaugCUGc -3'
miRNA:   3'- -CUGCCGCCGCCAUUG----UUGUCGa------GGCa -5'
1567 5' -56.6 NC_001347.2 + 185476 0.71 0.711016
Target:  5'- gGACGGCGuuGUGGcgcGCAGgGGCUCCGa -3'
miRNA:   3'- -CUGCCGC--CGCCau-UGUUgUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 214697 0.71 0.720687
Target:  5'- cACGGCGGCG--AACAGCAGCaUCgCGa -3'
miRNA:   3'- cUGCCGCCGCcaUUGUUGUCG-AG-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.