miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 5' -56.6 NC_001347.2 + 210493 0.68 0.860001
Target:  5'- aGCGGCGGuCGGUccagguCAACGGCguuucgCCGc -3'
miRNA:   3'- cUGCCGCC-GCCAuu----GUUGUCGa-----GGCa -5'
1567 5' -56.6 NC_001347.2 + 51428 0.68 0.860001
Target:  5'- uGAUGGCGGCG---AUAugGGCUCgCGUu -3'
miRNA:   3'- -CUGCCGCCGCcauUGUugUCGAG-GCA- -5'
1567 5' -56.6 NC_001347.2 + 197558 0.68 0.860001
Target:  5'- -cCGGCguGGCGGccGACGGCAGCgugCUGUg -3'
miRNA:   3'- cuGCCG--CCGCCa-UUGUUGUCGa--GGCA- -5'
1567 5' -56.6 NC_001347.2 + 47080 0.68 0.860001
Target:  5'- uGCGGCGGCGaa---GACAGCUgCGa -3'
miRNA:   3'- cUGCCGCCGCcauugUUGUCGAgGCa -5'
1567 5' -56.6 NC_001347.2 + 2140 0.68 0.862963
Target:  5'- gGACGcgcacGCGGUGGUcggggcggacgcggcAGCAGCAGCggcgCCGa -3'
miRNA:   3'- -CUGC-----CGCCGCCA---------------UUGUUGUCGa---GGCa -5'
1567 5' -56.6 NC_001347.2 + 157281 0.68 0.867348
Target:  5'- aGACGuCGGCGGUccuccAGCAGCAGCUg--- -3'
miRNA:   3'- -CUGCcGCCGCCA-----UUGUUGUCGAggca -5'
1567 5' -56.6 NC_001347.2 + 154905 0.68 0.870232
Target:  5'- aGGCGGCcgaagcgccGGCGGguccuacguugcuacUGccgGCGACGGCUCCGc -3'
miRNA:   3'- -CUGCCG---------CCGCC---------------AU---UGUUGUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 156676 0.68 0.881438
Target:  5'- cAUGGCGGCGGgu-CGugGCGGCUgUGUc -3'
miRNA:   3'- cUGCCGCCGCCauuGU--UGUCGAgGCA- -5'
1567 5' -56.6 NC_001347.2 + 166283 0.67 0.894048
Target:  5'- aGCGcGCGuugcaccGCGGUAACGACGGCgCCa- -3'
miRNA:   3'- cUGC-CGC-------CGCCAUUGUUGUCGaGGca -5'
1567 5' -56.6 NC_001347.2 + 133155 0.67 0.89469
Target:  5'- cAUGGCGGUGGUGGuCAACAuauauCUCCa- -3'
miRNA:   3'- cUGCCGCCGCCAUU-GUUGUc----GAGGca -5'
1567 5' -56.6 NC_001347.2 + 117900 0.67 0.89469
Target:  5'- gGGCGGCGGCGGgucccguGAUGGCaUCGUg -3'
miRNA:   3'- -CUGCCGCCGCCauug---UUGUCGaGGCA- -5'
1567 5' -56.6 NC_001347.2 + 153958 0.67 0.900993
Target:  5'- aGACGacGCGGCGGU----ACAGCUCgCGc -3'
miRNA:   3'- -CUGC--CGCCGCCAuuguUGUCGAG-GCa -5'
1567 5' -56.6 NC_001347.2 + 37318 0.67 0.900993
Target:  5'- uGGCGGCuuauguuucuggGGUGGgcGCGACGGCaaUUCGUc -3'
miRNA:   3'- -CUGCCG------------CCGCCauUGUUGUCG--AGGCA- -5'
1567 5' -56.6 NC_001347.2 + 44022 0.67 0.900993
Target:  5'- aACGGauaacGCGGUGGCGACGGCagCGg -3'
miRNA:   3'- cUGCCgc---CGCCAUUGUUGUCGagGCa -5'
1567 5' -56.6 NC_001347.2 + 173694 0.67 0.907076
Target:  5'- nGCGGUGGCGG---CggUGGUUCCGg -3'
miRNA:   3'- cUGCCGCCGCCauuGuuGUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 225559 0.67 0.907076
Target:  5'- gGACGGauggggagaaCGGCGGUGACuuAGCcGC-CCGUg -3'
miRNA:   3'- -CUGCC----------GCCGCCAUUG--UUGuCGaGGCA- -5'
1567 5' -56.6 NC_001347.2 + 78715 0.67 0.912936
Target:  5'- uGGCGGUGGaagacaaccgccUGGUGGcCAACAGCUUCu- -3'
miRNA:   3'- -CUGCCGCC------------GCCAUU-GUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 88612 0.67 0.912936
Target:  5'- aGCGGCGGCGGccuGC-GCGGC-CUGc -3'
miRNA:   3'- cUGCCGCCGCCau-UGuUGUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 22210 0.67 0.918573
Target:  5'- cACGcGCuGGUGGccgAACAGCAGCUCUu- -3'
miRNA:   3'- cUGC-CG-CCGCCa--UUGUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 117998 0.66 0.923984
Target:  5'- gGACGacaCGGUGGUugUAGCAGCgUCCGc -3'
miRNA:   3'- -CUGCc--GCCGCCAuuGUUGUCG-AGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.