miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 5' -56.6 NC_001347.2 + 1975 0.74 0.533678
Target:  5'- gGACGGCGGCGGgGACGAC-GUcCCGc -3'
miRNA:   3'- -CUGCCGCCGCCaUUGUUGuCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 2140 0.68 0.862963
Target:  5'- gGACGcgcacGCGGUGGUcggggcggacgcggcAGCAGCAGCggcgCCGa -3'
miRNA:   3'- -CUGC-----CGCCGCCA---------------UUGUUGUCGa---GGCa -5'
1567 5' -56.6 NC_001347.2 + 2187 0.66 0.943372
Target:  5'- nGACGGUgauGGUGGguuCGACAGCgauggcgggUCCGg -3'
miRNA:   3'- -CUGCCG---CCGCCauuGUUGUCG---------AGGCa -5'
1567 5' -56.6 NC_001347.2 + 6205 0.66 0.929169
Target:  5'- -cCGGCGGCGa-AACAAcCAGCgCCGg -3'
miRNA:   3'- cuGCCGCCGCcaUUGUU-GUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 7963 0.69 0.812049
Target:  5'- uGACGGUGGCGGcGGCAgaccaACAuGCgCCGa -3'
miRNA:   3'- -CUGCCGCCGCCaUUGU-----UGU-CGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 22210 0.67 0.918573
Target:  5'- cACGcGCuGGUGGccgAACAGCAGCUCUu- -3'
miRNA:   3'- cUGC-CG-CCGCCa--UUGUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 37168 0.7 0.758566
Target:  5'- gGGCGGUGGCGGccuUGGCGGuCGGgUCUGUc -3'
miRNA:   3'- -CUGCCGCCGCC---AUUGUU-GUCgAGGCA- -5'
1567 5' -56.6 NC_001347.2 + 37318 0.67 0.900993
Target:  5'- uGGCGGCuuauguuucuggGGUGGgcGCGACGGCaaUUCGUc -3'
miRNA:   3'- -CUGCCG------------CCGCCauUGUUGUCG--AGGCA- -5'
1567 5' -56.6 NC_001347.2 + 41170 0.71 0.749234
Target:  5'- cGCcGCGGCGGUGGCGACuGggCCGa -3'
miRNA:   3'- cUGcCGCCGCCAUUGUUGuCgaGGCa -5'
1567 5' -56.6 NC_001347.2 + 44022 0.67 0.900993
Target:  5'- aACGGauaacGCGGUGGCGACGGCagCGg -3'
miRNA:   3'- cUGCCgc---CGCCAUUGUUGUCGagGCa -5'
1567 5' -56.6 NC_001347.2 + 47080 0.68 0.860001
Target:  5'- uGCGGCGGCGaa---GACAGCUgCGa -3'
miRNA:   3'- cUGCCGCCGCcauugUUGUCGAgGCa -5'
1567 5' -56.6 NC_001347.2 + 47129 0.74 0.582453
Target:  5'- gGGCGGCGGCGGcaaUGGCcGCGGCagCGg -3'
miRNA:   3'- -CUGCCGCCGCC---AUUGuUGUCGagGCa -5'
1567 5' -56.6 NC_001347.2 + 51428 0.68 0.860001
Target:  5'- uGAUGGCGGCG---AUAugGGCUCgCGUu -3'
miRNA:   3'- -CUGCCGCCGCcauUGUugUCGAG-GCA- -5'
1567 5' -56.6 NC_001347.2 + 51954 0.69 0.844729
Target:  5'- cGACaGUGGCGGcagcagcccguuUGGCAGCGGUUCCc- -3'
miRNA:   3'- -CUGcCGCCGCC------------AUUGUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 59077 0.68 0.852459
Target:  5'- cGCGGCGGUuuuGGUGGCG-CGGcCUCCu- -3'
miRNA:   3'- cUGCCGCCG---CCAUUGUuGUC-GAGGca -5'
1567 5' -56.6 NC_001347.2 + 60534 0.7 0.758566
Target:  5'- cGCGGCGGCccuguggaaGGUAgauuACGACAGaUCCGUu -3'
miRNA:   3'- cUGCCGCCG---------CCAU----UGUUGUCgAGGCA- -5'
1567 5' -56.6 NC_001347.2 + 63824 0.72 0.691494
Target:  5'- aGCGGCGGCGGcGAUGGCGGggCUGg -3'
miRNA:   3'- cUGCCGCCGCCaUUGUUGUCgaGGCa -5'
1567 5' -56.6 NC_001347.2 + 66517 0.68 0.860001
Target:  5'- --aGGCGGCGGcGAUcGCAGcCUCCu- -3'
miRNA:   3'- cugCCGCCGCCaUUGuUGUC-GAGGca -5'
1567 5' -56.6 NC_001347.2 + 66788 0.75 0.524087
Target:  5'- cGACGGUGGUGGcGGCGGCGGCaguggagCCGa -3'
miRNA:   3'- -CUGCCGCCGCCaUUGUUGUCGa------GGCa -5'
1567 5' -56.6 NC_001347.2 + 66848 0.7 0.785895
Target:  5'- cGCGGCGGUGGcGACAACGGgUUUa- -3'
miRNA:   3'- cUGCCGCCGCCaUUGUUGUCgAGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.