miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 5' -56.6 NC_001347.2 + 142590 0.71 0.739804
Target:  5'- cGGgGGCGGCGGggGCAGCGGguuauugCCGg -3'
miRNA:   3'- -CUgCCGCCGCCauUGUUGUCga-----GGCa -5'
1567 5' -56.6 NC_001347.2 + 143000 0.78 0.361709
Target:  5'- cGGCGGCGGCGGUgguggaggagguugcGccgcaagcggcgGCAACAGCUUCGg -3'
miRNA:   3'- -CUGCCGCCGCCA---------------U------------UGUUGUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 150633 0.76 0.450111
Target:  5'- cGGCGcCGGCGGUAcuGCGGCGGUUUCGUa -3'
miRNA:   3'- -CUGCcGCCGCCAU--UGUUGUCGAGGCA- -5'
1567 5' -56.6 NC_001347.2 + 151987 0.7 0.780517
Target:  5'- uGACGGCGGCGGgguagaggagAGCAACAGgagaggaggagagCCGg -3'
miRNA:   3'- -CUGCCGCCGCCa---------UUGUUGUCga-----------GGCa -5'
1567 5' -56.6 NC_001347.2 + 152310 0.71 0.701282
Target:  5'- cGGCGGCGGUGGUGACugggGACGGUgaugaugCUGc -3'
miRNA:   3'- -CUGCCGCCGCCAUUG----UUGUCGa------GGCa -5'
1567 5' -56.6 NC_001347.2 + 153958 0.67 0.900993
Target:  5'- aGACGacGCGGCGGU----ACAGCUCgCGc -3'
miRNA:   3'- -CUGC--CGCCGCCAuuguUGUCGAG-GCa -5'
1567 5' -56.6 NC_001347.2 + 154905 0.68 0.870232
Target:  5'- aGGCGGCcgaagcgccGGCGGguccuacguugcuacUGccgGCGACGGCUCCGc -3'
miRNA:   3'- -CUGCCG---------CCGCC---------------AU---UGUUGUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 156676 0.68 0.881438
Target:  5'- cAUGGCGGCGGgu-CGugGCGGCUgUGUc -3'
miRNA:   3'- cUGCCGCCGCCauuGU--UGUCGAgGCA- -5'
1567 5' -56.6 NC_001347.2 + 157281 0.68 0.867348
Target:  5'- aGACGuCGGCGGUccuccAGCAGCAGCUg--- -3'
miRNA:   3'- -CUGCcGCCGCCA-----UUGUUGUCGAggca -5'
1567 5' -56.6 NC_001347.2 + 157437 0.71 0.739804
Target:  5'- aGCGGgaGGCGGUGACGGC-GCUCUu- -3'
miRNA:   3'- cUGCCg-CCGCCAUUGUUGuCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 158734 0.79 0.321552
Target:  5'- aGGCGcGCGGCGGUuuAGCAGCGGCUUCc- -3'
miRNA:   3'- -CUGC-CGCCGCCA--UUGUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 166283 0.67 0.894048
Target:  5'- aGCGcGCGuugcaccGCGGUAACGACGGCgCCa- -3'
miRNA:   3'- cUGC-CGC-------CGCCAUUGUUGUCGaGGca -5'
1567 5' -56.6 NC_001347.2 + 173544 0.84 0.166321
Target:  5'- cGGCGGCGGUGGUGGCGGCAGcCUCUc- -3'
miRNA:   3'- -CUGCCGCCGCCAUUGUUGUC-GAGGca -5'
1567 5' -56.6 NC_001347.2 + 173581 0.66 0.938863
Target:  5'- aAUGcCGGCGGUcugcauGACGACGGC-CCGg -3'
miRNA:   3'- cUGCcGCCGCCA------UUGUUGUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 173665 0.7 0.758566
Target:  5'- -gUGGCGGCGGUGGCGGCaagaAGCacgaCCGc -3'
miRNA:   3'- cuGCCGCCGCCAUUGUUG----UCGa---GGCa -5'
1567 5' -56.6 NC_001347.2 + 173694 0.67 0.907076
Target:  5'- nGCGGUGGCGG---CggUGGUUCCGg -3'
miRNA:   3'- cUGCCGCCGCCauuGuuGUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 173738 0.72 0.661879
Target:  5'- uGGCGGCGGCGGUGAuCAcgaccACGGUcuuUCCu- -3'
miRNA:   3'- -CUGCCGCCGCCAUU-GU-----UGUCG---AGGca -5'
1567 5' -56.6 NC_001347.2 + 173831 0.7 0.758566
Target:  5'- gGGCGGCGGCGGaggaggaggaGGCGGCGGUuuggaucgcaacUCCGg -3'
miRNA:   3'- -CUGCCGCCGCCa---------UUGUUGUCG------------AGGCa -5'
1567 5' -56.6 NC_001347.2 + 182234 0.66 0.934129
Target:  5'- uGACGuCGGUGGUGGCuguaGGCUaCCGa -3'
miRNA:   3'- -CUGCcGCCGCCAUUGuug-UCGA-GGCa -5'
1567 5' -56.6 NC_001347.2 + 184752 0.66 0.934129
Target:  5'- cGCGGUGGCGcucguGUGGCAGCAggGCUaCCa- -3'
miRNA:   3'- cUGCCGCCGC-----CAUUGUUGU--CGA-GGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.