miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 5' -56.6 NC_001347.2 + 185316 0.75 0.486433
Target:  5'- cGACGGCgguggGGCGGUAAUAguAUAGgUCCGUg -3'
miRNA:   3'- -CUGCCG-----CCGCCAUUGU--UGUCgAGGCA- -5'
1567 5' -56.6 NC_001347.2 + 185476 0.71 0.711016
Target:  5'- gGACGGCGuuGUGGcgcGCAGgGGCUCCGa -3'
miRNA:   3'- -CUGCCGC--CGCCau-UGUUgUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 192002 1.07 0.00497
Target:  5'- gGACGGCGGCGGUAACAACAGCUCCGUg -3'
miRNA:   3'- -CUGCCGCCGCCAUUGUUGUCGAGGCA- -5'
1567 5' -56.6 NC_001347.2 + 192053 0.71 0.749234
Target:  5'- cGACGGUGGCGGcGACGacACGGCgaCGg -3'
miRNA:   3'- -CUGCCGCCGCCaUUGU--UGUCGagGCa -5'
1567 5' -56.6 NC_001347.2 + 197558 0.68 0.860001
Target:  5'- -cCGGCguGGCGGccGACGGCAGCgugCUGUg -3'
miRNA:   3'- cuGCCG--CCGCCa-UUGUUGUCGa--GGCA- -5'
1567 5' -56.6 NC_001347.2 + 198666 0.73 0.621115
Target:  5'- cGACGGCaGUuguacauagaugaGGUAAC-ACAGCUCCGa -3'
miRNA:   3'- -CUGCCGcCG-------------CCAUUGuUGUCGAGGCa -5'
1567 5' -56.6 NC_001347.2 + 205284 0.66 0.943372
Target:  5'- uGACGGgGGCacgcGGUAACcuacgucgaAACAGCUCa-- -3'
miRNA:   3'- -CUGCCgCCG----CCAUUG---------UUGUCGAGgca -5'
1567 5' -56.6 NC_001347.2 + 210493 0.68 0.860001
Target:  5'- aGCGGCGGuCGGUccagguCAACGGCguuucgCCGc -3'
miRNA:   3'- cUGCCGCC-GCCAuu----GUUGUCGa-----GGCa -5'
1567 5' -56.6 NC_001347.2 + 214697 0.71 0.720687
Target:  5'- cACGGCGGCG--AACAGCAGCaUCgCGa -3'
miRNA:   3'- cUGCCGCCGCcaUUGUUGUCG-AG-GCa -5'
1567 5' -56.6 NC_001347.2 + 225559 0.67 0.907076
Target:  5'- gGACGGauggggagaaCGGCGGUGACuuAGCcGC-CCGUg -3'
miRNA:   3'- -CUGCC----------GCCGCCAUUG--UUGuCGaGGCA- -5'
1567 5' -56.6 NC_001347.2 + 228365 0.66 0.947659
Target:  5'- uGCGGUggauguGGCGGgguGCGGCGGuUUCCGa -3'
miRNA:   3'- cUGCCG------CCGCCau-UGUUGUC-GAGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.