Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1567 | 5' | -56.6 | NC_001347.2 | + | 228365 | 0.66 | 0.947659 |
Target: 5'- uGCGGUggauguGGCGGgguGCGGCGGuUUCCGa -3' miRNA: 3'- cUGCCG------CCGCCau-UGUUGUC-GAGGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 225559 | 0.67 | 0.907076 |
Target: 5'- gGACGGauggggagaaCGGCGGUGACuuAGCcGC-CCGUg -3' miRNA: 3'- -CUGCC----------GCCGCCAUUG--UUGuCGaGGCA- -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 214697 | 0.71 | 0.720687 |
Target: 5'- cACGGCGGCG--AACAGCAGCaUCgCGa -3' miRNA: 3'- cUGCCGCCGCcaUUGUUGUCG-AG-GCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 210493 | 0.68 | 0.860001 |
Target: 5'- aGCGGCGGuCGGUccagguCAACGGCguuucgCCGc -3' miRNA: 3'- cUGCCGCC-GCCAuu----GUUGUCGa-----GGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 205284 | 0.66 | 0.943372 |
Target: 5'- uGACGGgGGCacgcGGUAACcuacgucgaAACAGCUCa-- -3' miRNA: 3'- -CUGCCgCCG----CCAUUG---------UUGUCGAGgca -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 198666 | 0.73 | 0.621115 |
Target: 5'- cGACGGCaGUuguacauagaugaGGUAAC-ACAGCUCCGa -3' miRNA: 3'- -CUGCCGcCG-------------CCAUUGuUGUCGAGGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 197558 | 0.68 | 0.860001 |
Target: 5'- -cCGGCguGGCGGccGACGGCAGCgugCUGUg -3' miRNA: 3'- cuGCCG--CCGCCa-UUGUUGUCGa--GGCA- -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 192053 | 0.71 | 0.749234 |
Target: 5'- cGACGGUGGCGGcGACGacACGGCgaCGg -3' miRNA: 3'- -CUGCCGCCGCCaUUGU--UGUCGagGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 192002 | 1.07 | 0.00497 |
Target: 5'- gGACGGCGGCGGUAACAACAGCUCCGUg -3' miRNA: 3'- -CUGCCGCCGCCAUUGUUGUCGAGGCA- -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 185476 | 0.71 | 0.711016 |
Target: 5'- gGACGGCGuuGUGGcgcGCAGgGGCUCCGa -3' miRNA: 3'- -CUGCCGC--CGCCau-UGUUgUCGAGGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 185316 | 0.75 | 0.486433 |
Target: 5'- cGACGGCgguggGGCGGUAAUAguAUAGgUCCGUg -3' miRNA: 3'- -CUGCCG-----CCGCCAUUGU--UGUCgAGGCA- -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 184752 | 0.66 | 0.934129 |
Target: 5'- cGCGGUGGCGcucguGUGGCAGCAggGCUaCCa- -3' miRNA: 3'- cUGCCGCCGC-----CAUUGUUGU--CGA-GGca -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 182234 | 0.66 | 0.934129 |
Target: 5'- uGACGuCGGUGGUGGCuguaGGCUaCCGa -3' miRNA: 3'- -CUGCcGCCGCCAUUGuug-UCGA-GGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 173831 | 0.7 | 0.758566 |
Target: 5'- gGGCGGCGGCGGaggaggaggaGGCGGCGGUuuggaucgcaacUCCGg -3' miRNA: 3'- -CUGCCGCCGCCa---------UUGUUGUCG------------AGGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 173738 | 0.72 | 0.661879 |
Target: 5'- uGGCGGCGGCGGUGAuCAcgaccACGGUcuuUCCu- -3' miRNA: 3'- -CUGCCGCCGCCAUU-GU-----UGUCG---AGGca -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 173694 | 0.67 | 0.907076 |
Target: 5'- nGCGGUGGCGG---CggUGGUUCCGg -3' miRNA: 3'- cUGCCGCCGCCauuGuuGUCGAGGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 173665 | 0.7 | 0.758566 |
Target: 5'- -gUGGCGGCGGUGGCGGCaagaAGCacgaCCGc -3' miRNA: 3'- cuGCCGCCGCCAUUGUUG----UCGa---GGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 173581 | 0.66 | 0.938863 |
Target: 5'- aAUGcCGGCGGUcugcauGACGACGGC-CCGg -3' miRNA: 3'- cUGCcGCCGCCA------UUGUUGUCGaGGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 173544 | 0.84 | 0.166321 |
Target: 5'- cGGCGGCGGUGGUGGCGGCAGcCUCUc- -3' miRNA: 3'- -CUGCCGCCGCCAUUGUUGUC-GAGGca -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 166283 | 0.67 | 0.894048 |
Target: 5'- aGCGcGCGuugcaccGCGGUAACGACGGCgCCa- -3' miRNA: 3'- cUGC-CGC-------CGCCAUUGUUGUCGaGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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