miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1567 5' -56.6 NC_001347.2 + 99294 0.66 0.938863
Target:  5'- cGACGGCacGGCGcGUAACGcugcACGGCUagaUGUu -3'
miRNA:   3'- -CUGCCG--CCGC-CAUUGU----UGUCGAg--GCA- -5'
1567 5' -56.6 NC_001347.2 + 98053 0.66 0.934129
Target:  5'- cGCGGCGGCaGcGGCcGCGGCUUCc- -3'
miRNA:   3'- cUGCCGCCGcCaUUGuUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 97915 0.78 0.336026
Target:  5'- gGGCGGCGGCGGUAACAcACGGCg---- -3'
miRNA:   3'- -CUGCCGCCGCCAUUGU-UGUCGaggca -5'
1567 5' -56.6 NC_001347.2 + 88612 0.67 0.912936
Target:  5'- aGCGGCGGCGGccuGC-GCGGC-CUGc -3'
miRNA:   3'- cUGCCGCCGCCau-UGuUGUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 82718 0.73 0.62211
Target:  5'- -gUGGUGGCGGUGguGCAGCGGCggCUGa -3'
miRNA:   3'- cuGCCGCCGCCAU--UGUUGUCGa-GGCa -5'
1567 5' -56.6 NC_001347.2 + 81564 0.66 0.923984
Target:  5'- uGGCaGCGGCGGcAACAGcCAGCgacgaucgCCGc -3'
miRNA:   3'- -CUGcCGCCGCCaUUGUU-GUCGa-------GGCa -5'
1567 5' -56.6 NC_001347.2 + 80885 0.71 0.720687
Target:  5'- aAUGGCGGUGaGUGACGacGCAGC-CCGc -3'
miRNA:   3'- cUGCCGCCGC-CAUUGU--UGUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 78715 0.67 0.912936
Target:  5'- uGGCGGUGGaagacaaccgccUGGUGGcCAACAGCUUCu- -3'
miRNA:   3'- -CUGCCGCC------------GCCAUU-GUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 76620 0.68 0.860001
Target:  5'- aGGCGGCGGCuGcGGCcGCGGCggaggCCGa -3'
miRNA:   3'- -CUGCCGCCGcCaUUGuUGUCGa----GGCa -5'
1567 5' -56.6 NC_001347.2 + 75410 0.75 0.477219
Target:  5'- aGCGGCGGCcGUGGCGGCGGCagCGg -3'
miRNA:   3'- cUGCCGCCGcCAUUGUUGUCGagGCa -5'
1567 5' -56.6 NC_001347.2 + 68217 0.7 0.776905
Target:  5'- aGACGGCGgaaGCGGUAGacGCGGCgCCGc -3'
miRNA:   3'- -CUGCCGC---CGCCAUUguUGUCGaGGCa -5'
1567 5' -56.6 NC_001347.2 + 66848 0.7 0.785895
Target:  5'- cGCGGCGGUGGcGACAACGGgUUUa- -3'
miRNA:   3'- cUGCCGCCGCCaUUGUUGUCgAGGca -5'
1567 5' -56.6 NC_001347.2 + 66788 0.75 0.524087
Target:  5'- cGACGGUGGUGGcGGCGGCGGCaguggagCCGa -3'
miRNA:   3'- -CUGCCGCCGCCaUUGUUGUCGa------GGCa -5'
1567 5' -56.6 NC_001347.2 + 66517 0.68 0.860001
Target:  5'- --aGGCGGCGGcGAUcGCAGcCUCCu- -3'
miRNA:   3'- cugCCGCCGCCaUUGuUGUC-GAGGca -5'
1567 5' -56.6 NC_001347.2 + 63824 0.72 0.691494
Target:  5'- aGCGGCGGCGGcGAUGGCGGggCUGg -3'
miRNA:   3'- cUGCCGCCGCCaUUGUUGUCgaGGCa -5'
1567 5' -56.6 NC_001347.2 + 60534 0.7 0.758566
Target:  5'- cGCGGCGGCccuguggaaGGUAgauuACGACAGaUCCGUu -3'
miRNA:   3'- cUGCCGCCG---------CCAU----UGUUGUCgAGGCA- -5'
1567 5' -56.6 NC_001347.2 + 59077 0.68 0.852459
Target:  5'- cGCGGCGGUuuuGGUGGCG-CGGcCUCCu- -3'
miRNA:   3'- cUGCCGCCG---CCAUUGUuGUC-GAGGca -5'
1567 5' -56.6 NC_001347.2 + 51954 0.69 0.844729
Target:  5'- cGACaGUGGCGGcagcagcccguuUGGCAGCGGUUCCc- -3'
miRNA:   3'- -CUGcCGCCGCC------------AUUGUUGUCGAGGca -5'
1567 5' -56.6 NC_001347.2 + 51428 0.68 0.860001
Target:  5'- uGAUGGCGGCG---AUAugGGCUCgCGUu -3'
miRNA:   3'- -CUGCCGCCGCcauUGUugUCGAG-GCA- -5'
1567 5' -56.6 NC_001347.2 + 47129 0.74 0.582453
Target:  5'- gGGCGGCGGCGGcaaUGGCcGCGGCagCGg -3'
miRNA:   3'- -CUGCCGCCGCC---AUUGuUGUCGagGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.