Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1567 | 5' | -56.6 | NC_001347.2 | + | 197558 | 0.68 | 0.860001 |
Target: 5'- -cCGGCguGGCGGccGACGGCAGCgugCUGUg -3' miRNA: 3'- cuGCCG--CCGCCa-UUGUUGUCGa--GGCA- -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 2140 | 0.68 | 0.862963 |
Target: 5'- gGACGcgcacGCGGUGGUcggggcggacgcggcAGCAGCAGCggcgCCGa -3' miRNA: 3'- -CUGC-----CGCCGCCA---------------UUGUUGUCGa---GGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 210493 | 0.68 | 0.860001 |
Target: 5'- aGCGGCGGuCGGUccagguCAACGGCguuucgCCGc -3' miRNA: 3'- cUGCCGCC-GCCAuu----GUUGUCGa-----GGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 157281 | 0.68 | 0.867348 |
Target: 5'- aGACGuCGGCGGUccuccAGCAGCAGCUg--- -3' miRNA: 3'- -CUGCcGCCGCCA-----UUGUUGUCGAggca -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 154905 | 0.68 | 0.870232 |
Target: 5'- aGGCGGCcgaagcgccGGCGGguccuacguugcuacUGccgGCGACGGCUCCGc -3' miRNA: 3'- -CUGCCG---------CCGCC---------------AU---UGUUGUCGAGGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 166283 | 0.67 | 0.894048 |
Target: 5'- aGCGcGCGuugcaccGCGGUAACGACGGCgCCa- -3' miRNA: 3'- cUGC-CGC-------CGCCAUUGUUGUCGaGGca -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 156676 | 0.68 | 0.881438 |
Target: 5'- cAUGGCGGCGGgu-CGugGCGGCUgUGUc -3' miRNA: 3'- cUGCCGCCGCCauuGU--UGUCGAgGCA- -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 117900 | 0.67 | 0.89469 |
Target: 5'- gGGCGGCGGCGGgucccguGAUGGCaUCGUg -3' miRNA: 3'- -CUGCCGCCGCCauug---UUGUCGaGGCA- -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 44022 | 0.67 | 0.900993 |
Target: 5'- aACGGauaacGCGGUGGCGACGGCagCGg -3' miRNA: 3'- cUGCCgc---CGCCAUUGUUGUCGagGCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 153958 | 0.67 | 0.900993 |
Target: 5'- aGACGacGCGGCGGU----ACAGCUCgCGc -3' miRNA: 3'- -CUGC--CGCCGCCAuuguUGUCGAG-GCa -5' |
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1567 | 5' | -56.6 | NC_001347.2 | + | 228365 | 0.66 | 0.947659 |
Target: 5'- uGCGGUggauguGGCGGgguGCGGCGGuUUCCGa -3' miRNA: 3'- cUGCCG------CCGCCau-UGUUGUC-GAGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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