miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15670 3' -61.8 NC_004065.1 + 145447 0.66 0.792024
Target:  5'- cGCgAUggaGAGGCgaugGCGuCGGggGCUGCCg -3'
miRNA:   3'- -CGgUG---CUCCGa---CGCcGCCagCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 91186 0.66 0.792024
Target:  5'- gGCCGCGGaagcgccgucGGCgugcGCGGCaucGG-CGCcGCCg -3'
miRNA:   3'- -CGGUGCU----------CCGa---CGCCG---CCaGCGaCGG- -5'
15670 3' -61.8 NC_004065.1 + 152904 0.66 0.792024
Target:  5'- aGCCcCGucuGacgaUGuCGGCGG-CGCUGCCg -3'
miRNA:   3'- -CGGuGCuc-Cg---AC-GCCGCCaGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 58427 0.66 0.792024
Target:  5'- gGCgAUGcGGUUGCuGGCGGugaacucgagcUCGCUGUUa -3'
miRNA:   3'- -CGgUGCuCCGACG-CCGCC-----------AGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 115326 0.66 0.791176
Target:  5'- aGCCGacCGAGGCcGCGuccucgcGCGcGcCGUUGCCc -3'
miRNA:   3'- -CGGU--GCUCCGaCGC-------CGC-CaGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 68791 0.66 0.789475
Target:  5'- gGCCgugucggagaacguGCGGGcGCUGCGcGaGGUCgaGCUGCUg -3'
miRNA:   3'- -CGG--------------UGCUC-CGACGC-CgCCAG--CGACGG- -5'
15670 3' -61.8 NC_004065.1 + 81436 0.66 0.786914
Target:  5'- gGCCACGAGGCgGCcgccgcgaucgaggaGGCGG-CgGCgggggGCg -3'
miRNA:   3'- -CGGUGCUCCGaCG---------------CCGCCaG-CGa----CGg -5'
15670 3' -61.8 NC_004065.1 + 32156 0.66 0.783483
Target:  5'- --aACGAGGuCUGCGaGCuGGucaUCGCcGCCg -3'
miRNA:   3'- cggUGCUCC-GACGC-CG-CC---AGCGaCGG- -5'
15670 3' -61.8 NC_004065.1 + 182629 0.66 0.783483
Target:  5'- gGCCuuuuauuGGCUGCGGUguuaaGGcaaGCUGCCu -3'
miRNA:   3'- -CGGugcu---CCGACGCCG-----CCag-CGACGG- -5'
15670 3' -61.8 NC_004065.1 + 99695 0.66 0.783483
Target:  5'- --gGCGAGGCgcGCgaugucgaGGCGG-CGuCUGCCg -3'
miRNA:   3'- cggUGCUCCGa-CG--------CCGCCaGC-GACGG- -5'
15670 3' -61.8 NC_004065.1 + 141262 0.66 0.783483
Target:  5'- -aCACGAGGUUGUGucucaGG-CaGCUGCCg -3'
miRNA:   3'- cgGUGCUCCGACGCcg---CCaG-CGACGG- -5'
15670 3' -61.8 NC_004065.1 + 68730 0.66 0.783483
Target:  5'- aCCGCauc-CUGaCGG-GGUCGCUGCCg -3'
miRNA:   3'- cGGUGcuccGAC-GCCgCCAGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 127227 0.66 0.783483
Target:  5'- gGCCGCGAGGaucgggcgcgGUGGCGGggaugaugagCGCgaGCg -3'
miRNA:   3'- -CGGUGCUCCga--------CGCCGCCa---------GCGa-CGg -5'
15670 3' -61.8 NC_004065.1 + 149203 0.66 0.783483
Target:  5'- cGCU-CGGcGCUGCuGCuGUCGCUGCUc -3'
miRNA:   3'- -CGGuGCUcCGACGcCGcCAGCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 127134 0.66 0.783483
Target:  5'- cGCgGCGGcGGCgcuaccgGCGGCGG-CGaucGCCc -3'
miRNA:   3'- -CGgUGCU-CCGa------CGCCGCCaGCga-CGG- -5'
15670 3' -61.8 NC_004065.1 + 119123 0.66 0.783483
Target:  5'- cGCCAUcgGAGaGCUGCGcuuCGuGUCGCgGUCg -3'
miRNA:   3'- -CGGUG--CUC-CGACGCc--GC-CAGCGaCGG- -5'
15670 3' -61.8 NC_004065.1 + 83276 0.66 0.774823
Target:  5'- aGUacuCGAccGGCcucGCGGCGGccgacCGCUGCCu -3'
miRNA:   3'- -CGgu-GCU--CCGa--CGCCGCCa----GCGACGG- -5'
15670 3' -61.8 NC_004065.1 + 57460 0.66 0.774823
Target:  5'- cGCCGuCGuGGCgauggcGCGGCGGUgGUggugaGCUu -3'
miRNA:   3'- -CGGU-GCuCCGa-----CGCCGCCAgCGa----CGG- -5'
15670 3' -61.8 NC_004065.1 + 225373 0.66 0.774823
Target:  5'- cUCugGAcGCccGCGGCGGgggCGCUGgCg -3'
miRNA:   3'- cGGugCUcCGa-CGCCGCCa--GCGACgG- -5'
15670 3' -61.8 NC_004065.1 + 120881 0.66 0.774823
Target:  5'- uGCC-CGGGGUcaggGCGGCGucUCGCgGCg -3'
miRNA:   3'- -CGGuGCUCCGa---CGCCGCc-AGCGaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.