miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15670 5' -55.7 NC_004065.1 + 196339 0.71 0.800334
Target:  5'- gGGGA-CAgauGACUCGcAUCUCGCaGCGGCCc -3'
miRNA:   3'- -CUCUaGU---CUGAGC-UGGAGCG-CGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 172394 0.71 0.764412
Target:  5'- gGAGAUCGuauaacucGACUCcuuguGCCUCG-GCAGCCu -3'
miRNA:   3'- -CUCUAGU--------CUGAGc----UGGAGCgCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 100183 0.71 0.800334
Target:  5'- cGGcUCAGACccugcaGGuCCUCGCGCAGCUu -3'
miRNA:   3'- cUCuAGUCUGag----CU-GGAGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 164917 0.7 0.849747
Target:  5'- -cGGUCGGA-UCGACCUgggcgaCGCGC-GCCg -3'
miRNA:   3'- cuCUAGUCUgAGCUGGA------GCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 135050 0.7 0.849747
Target:  5'- aGAGGUCAGGCguacgCGGCagcCGCGgAGCg -3'
miRNA:   3'- -CUCUAGUCUGa----GCUGga-GCGCgUCGg -5'
15670 5' -55.7 NC_004065.1 + 24110 0.7 0.825791
Target:  5'- uGGcgCcGACgUCGGCCUCG-GCGGCCc -3'
miRNA:   3'- cUCuaGuCUG-AGCUGGAGCgCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 126603 0.7 0.817463
Target:  5'- -cGAUCAGGCcgCGcuCCaUCGCGuCGGCCg -3'
miRNA:   3'- cuCUAGUCUGa-GCu-GG-AGCGC-GUCGG- -5'
15670 5' -55.7 NC_004065.1 + 109945 0.7 0.808974
Target:  5'- gGAGGUCAuGAgUCG-CCUCuccgGCGCGGUCu -3'
miRNA:   3'- -CUCUAGU-CUgAGCuGGAG----CGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 135646 0.7 0.825791
Target:  5'- cGGGGUCGGGCgCGGCCggCGCGUcaCCg -3'
miRNA:   3'- -CUCUAGUCUGaGCUGGa-GCGCGucGG- -5'
15670 5' -55.7 NC_004065.1 + 63303 0.69 0.857367
Target:  5'- cAGGUCcgGGAUcgUCG-CCUCGCGC-GCCg -3'
miRNA:   3'- cUCUAG--UCUG--AGCuGGAGCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 115011 0.69 0.885862
Target:  5'- cGAGAUCcgcaaAGACaucucgcaGAUC-CGCGCGGCCg -3'
miRNA:   3'- -CUCUAG-----UCUGag------CUGGaGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 206549 0.69 0.86406
Target:  5'- --aAUCGGACUCGGCgUCGUcaucgucGCgAGCCg -3'
miRNA:   3'- cucUAGUCUGAGCUGgAGCG-------CG-UCGG- -5'
15670 5' -55.7 NC_004065.1 + 74057 0.69 0.86406
Target:  5'- cGAGG-CGGAggagcuuCUCGACggaugaCUCGCGCAGCa -3'
miRNA:   3'- -CUCUaGUCU-------GAGCUG------GAGCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 128065 0.69 0.885862
Target:  5'- aAGA-CGGACUgGugCUUGgGCAGCa -3'
miRNA:   3'- cUCUaGUCUGAgCugGAGCgCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 193962 0.69 0.885862
Target:  5'- -uGAUCGcACUCuGCCUCcuCGCGGCCg -3'
miRNA:   3'- cuCUAGUcUGAGcUGGAGc-GCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 59838 0.69 0.872022
Target:  5'- -cGAUgGGGCUCGAUCUUGaCGgAGCg -3'
miRNA:   3'- cuCUAgUCUGAGCUGGAGC-GCgUCGg -5'
15670 5' -55.7 NC_004065.1 + 73093 0.69 0.885862
Target:  5'- aGAGAgcgUCgggAGACUCuuCCUCGuCGguGCCg -3'
miRNA:   3'- -CUCU---AG---UCUGAGcuGGAGC-GCguCGG- -5'
15670 5' -55.7 NC_004065.1 + 48342 0.68 0.916685
Target:  5'- cGGGGUCGGAa--GACCgagGuCGCGGCCu -3'
miRNA:   3'- -CUCUAGUCUgagCUGGag-C-GCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 109904 0.68 0.916685
Target:  5'- gGGGGUCccGGCUCGuCCgC-CGCGGCCg -3'
miRNA:   3'- -CUCUAGu-CUGAGCuGGaGcGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 88578 0.68 0.922181
Target:  5'- -cGAUCucggGGAUgUCGcCCUCGuCGCGGCCc -3'
miRNA:   3'- cuCUAG----UCUG-AGCuGGAGC-GCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.