miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15670 5' -55.7 NC_004065.1 + 63506 0.67 0.92745
Target:  5'- cAGGUgCGGA--UGGCCUCGCccucGCGGCCg -3'
miRNA:   3'- cUCUA-GUCUgaGCUGGAGCG----CGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 162667 0.67 0.92745
Target:  5'- --uGUCuAGACUCGACCgCGCGUccggagcGCCa -3'
miRNA:   3'- cucUAG-UCUGAGCUGGaGCGCGu------CGG- -5'
15670 5' -55.7 NC_004065.1 + 19354 0.67 0.92745
Target:  5'- gGAGGUCucucgGGAggcguCUCGGUCUCGCGCucgGGCCu -3'
miRNA:   3'- -CUCUAG-----UCU-----GAGCUGGAGCGCG---UCGG- -5'
15670 5' -55.7 NC_004065.1 + 88578 0.68 0.922181
Target:  5'- -cGAUCucggGGAUgUCGcCCUCGuCGCGGCCc -3'
miRNA:   3'- cuCUAG----UCUG-AGCuGGAGC-GCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 69903 0.68 0.922181
Target:  5'- ---uUCAGccACUCGGaUUCGCGCAGCUc -3'
miRNA:   3'- cucuAGUC--UGAGCUgGAGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 109904 0.68 0.916685
Target:  5'- gGGGGUCccGGCUCGuCCgC-CGCGGCCg -3'
miRNA:   3'- -CUCUAGu-CUGAGCuGGaGcGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 48342 0.68 0.916685
Target:  5'- cGGGGUCGGAa--GACCgagGuCGCGGCCu -3'
miRNA:   3'- -CUCUAGUCUgagCUGGag-C-GCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 96614 0.68 0.910964
Target:  5'- gGAGAUCuGACcccuUCGuCCUCGUcgccgGCGGUCg -3'
miRNA:   3'- -CUCUAGuCUG----AGCuGGAGCG-----CGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 217158 0.68 0.909793
Target:  5'- gGAGcAUCuucuucucuuCUCGcACCUCGCGCcGCCg -3'
miRNA:   3'- -CUC-UAGucu-------GAGC-UGGAGCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 114558 0.68 0.905019
Target:  5'- gGGGAUaccaucaucCGGAUcgCGACC-CGCGCGGCg -3'
miRNA:   3'- -CUCUA---------GUCUGa-GCUGGaGCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 139397 0.68 0.905019
Target:  5'- uGGGGUCGcGA--CGGCCcgCGCGCAGCg -3'
miRNA:   3'- -CUCUAGU-CUgaGCUGGa-GCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 59847 0.68 0.892465
Target:  5'- -cGA-CAGACagccguucgUCGACCaUGCGCAGUCg -3'
miRNA:   3'- cuCUaGUCUG---------AGCUGGaGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 115011 0.69 0.885862
Target:  5'- cGAGAUCcgcaaAGACaucucgcaGAUC-CGCGCGGCCg -3'
miRNA:   3'- -CUCUAG-----UCUGag------CUGGaGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 193962 0.69 0.885862
Target:  5'- -uGAUCGcACUCuGCCUCcuCGCGGCCg -3'
miRNA:   3'- cuCUAGUcUGAGcUGGAGc-GCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 128065 0.69 0.885862
Target:  5'- aAGA-CGGACUgGugCUUGgGCAGCa -3'
miRNA:   3'- cUCUaGUCUGAgCugGAGCgCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 73093 0.69 0.885862
Target:  5'- aGAGAgcgUCgggAGACUCuuCCUCGuCGguGCCg -3'
miRNA:   3'- -CUCU---AG---UCUGAGcuGGAGC-GCguCGG- -5'
15670 5' -55.7 NC_004065.1 + 59838 0.69 0.872022
Target:  5'- -cGAUgGGGCUCGAUCUUGaCGgAGCg -3'
miRNA:   3'- cuCUAgUCUGAGCUGGAGC-GCgUCGg -5'
15670 5' -55.7 NC_004065.1 + 206549 0.69 0.86406
Target:  5'- --aAUCGGACUCGGCgUCGUcaucgucGCgAGCCg -3'
miRNA:   3'- cucUAGUCUGAGCUGgAGCG-------CG-UCGG- -5'
15670 5' -55.7 NC_004065.1 + 74057 0.69 0.86406
Target:  5'- cGAGG-CGGAggagcuuCUCGACggaugaCUCGCGCAGCa -3'
miRNA:   3'- -CUCUaGUCU-------GAGCUG------GAGCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 63303 0.69 0.857367
Target:  5'- cAGGUCcgGGAUcgUCG-CCUCGCGC-GCCg -3'
miRNA:   3'- cUCUAG--UCUG--AGCuGGAGCGCGuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.