miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15670 5' -55.7 NC_004065.1 + 162667 0.67 0.92745
Target:  5'- --uGUCuAGACUCGACCgCGCGUccggagcGCCa -3'
miRNA:   3'- cucUAG-UCUGAGCUGGaGCGCGu------CGG- -5'
15670 5' -55.7 NC_004065.1 + 162626 0.66 0.964836
Target:  5'- gGAGA-CAGGCacauuacUGGCCUCGgCGCccAGCCu -3'
miRNA:   3'- -CUCUaGUCUGa------GCUGGAGC-GCG--UCGG- -5'
15670 5' -55.7 NC_004065.1 + 162539 0.74 0.602325
Target:  5'- cAGGUCucggacgggcucucgAGACUCGAUCUCGUGCAuGUCg -3'
miRNA:   3'- cUCUAG---------------UCUGAGCUGGAGCGCGU-CGG- -5'
15670 5' -55.7 NC_004065.1 + 162451 0.75 0.539458
Target:  5'- cGAGGccccugcgcuUCGG-CgaaGGCCUCGCGCGGCCg -3'
miRNA:   3'- -CUCU----------AGUCuGag-CUGGAGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 158715 0.66 0.958047
Target:  5'- -uGGUCugcgcgcccGACgugCGACCa-GCGCGGCCa -3'
miRNA:   3'- cuCUAGu--------CUGa--GCUGGagCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 157390 0.72 0.74575
Target:  5'- -cGAUCAauguaucucGACUCGACCUCGUucGCgAGUCg -3'
miRNA:   3'- cuCUAGU---------CUGAGCUGGAGCG--CG-UCGG- -5'
15670 5' -55.7 NC_004065.1 + 153459 0.72 0.74575
Target:  5'- uGGAUUAcGGggUGACCUCGCGCAugGCCa -3'
miRNA:   3'- cUCUAGU-CUgaGCUGGAGCGCGU--CGG- -5'
15670 5' -55.7 NC_004065.1 + 140491 0.66 0.964836
Target:  5'- uGGGAcuaUCGGAUaCGACaUCG-GCGGCCg -3'
miRNA:   3'- -CUCU---AGUCUGaGCUGgAGCgCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 139397 0.68 0.905019
Target:  5'- uGGGGUCGcGA--CGGCCcgCGCGCAGCg -3'
miRNA:   3'- -CUCUAGU-CUgaGCUGGa-GCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 135646 0.7 0.825791
Target:  5'- cGGGGUCGGGCgCGGCCggCGCGUcaCCg -3'
miRNA:   3'- -CUCUAGUCUGaGCUGGa-GCGCGucGG- -5'
15670 5' -55.7 NC_004065.1 + 135050 0.7 0.849747
Target:  5'- aGAGGUCAGGCguacgCGGCagcCGCGgAGCg -3'
miRNA:   3'- -CUCUAGUCUGa----GCUGga-GCGCgUCGg -5'
15670 5' -55.7 NC_004065.1 + 128065 0.69 0.885862
Target:  5'- aAGA-CGGACUgGugCUUGgGCAGCa -3'
miRNA:   3'- cUCUaGUCUGAgCugGAGCgCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 126603 0.7 0.817463
Target:  5'- -cGAUCAGGCcgCGcuCCaUCGCGuCGGCCg -3'
miRNA:   3'- cuCUAGUCUGa-GCu-GG-AGCGC-GUCGG- -5'
15670 5' -55.7 NC_004065.1 + 124759 0.67 0.92745
Target:  5'- cGAGAacgcgCAGAUgcuggaGAUC-CGCGCGGCCc -3'
miRNA:   3'- -CUCUa----GUCUGag----CUGGaGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 124027 0.73 0.697591
Target:  5'- uGGGUCcGACaggCGACCggCGCGCGGCg -3'
miRNA:   3'- cUCUAGuCUGa--GCUGGa-GCGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 122863 0.72 0.726709
Target:  5'- ---cUCGGACUgGgACCUCGUGCuGCCc -3'
miRNA:   3'- cucuAGUCUGAgC-UGGAGCGCGuCGG- -5'
15670 5' -55.7 NC_004065.1 + 122514 0.66 0.958047
Target:  5'- cAGGUCGGugUCGGCgCgggaGCaGCGGCg -3'
miRNA:   3'- cUCUAGUCugAGCUG-Gag--CG-CGUCGg -5'
15670 5' -55.7 NC_004065.1 + 120885 0.66 0.958047
Target:  5'- cGGGGUCAGGg-CGGCgUCuCGCGGCg -3'
miRNA:   3'- -CUCUAGUCUgaGCUGgAGcGCGUCGg -5'
15670 5' -55.7 NC_004065.1 + 116776 0.67 0.941899
Target:  5'- cGAGAUCGccUUCGG--UUGCGCGGCCa -3'
miRNA:   3'- -CUCUAGUcuGAGCUggAGCGCGUCGG- -5'
15670 5' -55.7 NC_004065.1 + 115336 0.67 0.932492
Target:  5'- -uGGUCAGAagagcCGACCgaggccgcguccUCGCGCGcGCCg -3'
miRNA:   3'- cuCUAGUCUga---GCUGG------------AGCGCGU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.