miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15671 3' -57.1 NC_004065.1 + 99374 0.66 0.946134
Target:  5'- aGCGACGGCGCCGACu--GUCCCgacUCGa -3'
miRNA:   3'- -UGCUGUUGUGGUUGcucCGGGGa--GGC- -5'
15671 3' -57.1 NC_004065.1 + 186568 0.66 0.946134
Target:  5'- uGCGACAacgucuACACCGAgGAcGGCggCgCUCCGu -3'
miRNA:   3'- -UGCUGU------UGUGGUUgCU-CCG--GgGAGGC- -5'
15671 3' -57.1 NC_004065.1 + 42701 0.66 0.946134
Target:  5'- aGCuGCAGaggUCGGCGAGcGCUCCUCCGc -3'
miRNA:   3'- -UGcUGUUgu-GGUUGCUC-CGGGGAGGC- -5'
15671 3' -57.1 NC_004065.1 + 61416 0.66 0.946134
Target:  5'- cAUGACGACGgUcgaguaGAGGCCCCUaCCc -3'
miRNA:   3'- -UGCUGUUGUgGuug---CUCCGGGGA-GGc -5'
15671 3' -57.1 NC_004065.1 + 34052 0.66 0.946134
Target:  5'- cAUGACGAaGCCGaagcGCGAGGCCUgCUCg- -3'
miRNA:   3'- -UGCUGUUgUGGU----UGCUCCGGG-GAGgc -5'
15671 3' -57.1 NC_004065.1 + 48856 0.66 0.946134
Target:  5'- uCGACGGugucauCGCCAGCcuccugGAGGCCgaCUCCGu -3'
miRNA:   3'- uGCUGUU------GUGGUUG------CUCCGGg-GAGGC- -5'
15671 3' -57.1 NC_004065.1 + 108946 0.66 0.944434
Target:  5'- uGCGGCAguACGCCGACGAccuggggcacgacGCCaggCUCCGa -3'
miRNA:   3'- -UGCUGU--UGUGGUUGCUc------------CGGg--GAGGC- -5'
15671 3' -57.1 NC_004065.1 + 190036 0.66 0.941817
Target:  5'- gACGACGACAUCccccCGGGguuucuggggcGCCCCgCCGg -3'
miRNA:   3'- -UGCUGUUGUGGuu--GCUC-----------CGGGGaGGC- -5'
15671 3' -57.1 NC_004065.1 + 64111 0.66 0.941817
Target:  5'- cACGGCAccuucGgGCCGGCGcagaaaGGGCUUCUCCu -3'
miRNA:   3'- -UGCUGU-----UgUGGUUGC------UCCGGGGAGGc -5'
15671 3' -57.1 NC_004065.1 + 74131 0.66 0.941817
Target:  5'- aACaACAACACCGGCGcuGCCggUCCGa -3'
miRNA:   3'- -UGcUGUUGUGGUUGCucCGGggAGGC- -5'
15671 3' -57.1 NC_004065.1 + 164102 0.66 0.941817
Target:  5'- uACGGCGACgguaACCGAgacCGGGGCgUCUgCCGa -3'
miRNA:   3'- -UGCUGUUG----UGGUU---GCUCCGgGGA-GGC- -5'
15671 3' -57.1 NC_004065.1 + 131125 0.66 0.937282
Target:  5'- cACGcCGGCGCC--CGAGGCUggUCUCCa -3'
miRNA:   3'- -UGCuGUUGUGGuuGCUCCGG--GGAGGc -5'
15671 3' -57.1 NC_004065.1 + 145710 0.66 0.937282
Target:  5'- cCGGCAGCccCCGACGccaucGCCUCUCCa -3'
miRNA:   3'- uGCUGUUGu-GGUUGCuc---CGGGGAGGc -5'
15671 3' -57.1 NC_004065.1 + 193995 0.66 0.937282
Target:  5'- uCGGCAGaGCCGagGCGAuGGCgCCUUCGa -3'
miRNA:   3'- uGCUGUUgUGGU--UGCU-CCGgGGAGGC- -5'
15671 3' -57.1 NC_004065.1 + 128667 0.66 0.937282
Target:  5'- gUGGCGGCGCCGccgccgcugccGCucGGCCCCcacagCCGg -3'
miRNA:   3'- uGCUGUUGUGGU-----------UGcuCCGGGGa----GGC- -5'
15671 3' -57.1 NC_004065.1 + 114758 0.66 0.937282
Target:  5'- gACGACGACGaugcgaugaCGACGAGGaUCUCgaagCCGg -3'
miRNA:   3'- -UGCUGUUGUg--------GUUGCUCC-GGGGa---GGC- -5'
15671 3' -57.1 NC_004065.1 + 179992 0.66 0.937282
Target:  5'- gUGGCuuCACCAGC-AGGUUCCUCUu -3'
miRNA:   3'- uGCUGuuGUGGUUGcUCCGGGGAGGc -5'
15671 3' -57.1 NC_004065.1 + 180019 0.66 0.937282
Target:  5'- gUGACAcCACCAACa--GCUCCUCCu -3'
miRNA:   3'- uGCUGUuGUGGUUGcucCGGGGAGGc -5'
15671 3' -57.1 NC_004065.1 + 109654 0.66 0.937282
Target:  5'- uGCG-CGACuCCGGC-AGGgUCCUCCGg -3'
miRNA:   3'- -UGCuGUUGuGGUUGcUCCgGGGAGGC- -5'
15671 3' -57.1 NC_004065.1 + 75827 0.66 0.937282
Target:  5'- cCGGCGACACgAACGucacGGCCgCCgagaccacguacUCCGa -3'
miRNA:   3'- uGCUGUUGUGgUUGCu---CCGG-GG------------AGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.