Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
15671 | 5' | -58.7 | NC_004065.1 | + | 17998 | 0.68 | 0.820855 |
Target: 5'- uGUCGGGGAGcUgGagGGUGUCGuAGUCg -3' miRNA: 3'- -CGGCCUCUCcAgCagCCGCAGC-UCAG- -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 25757 | 0.68 | 0.836692 |
Target: 5'- --aGGAccaGGGuGUCGUCGGCGaccUUGAGUCc -3' miRNA: 3'- cggCCU---CUC-CAGCAGCCGC---AGCUCAG- -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 200006 | 0.68 | 0.795975 |
Target: 5'- aCUGGAagcacuucGGGGUCGUgGGCcugCGGGUCg -3' miRNA: 3'- cGGCCU--------CUCCAGCAgCCGca-GCUCAG- -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 108162 | 0.68 | 0.812705 |
Target: 5'- cGgCGaGAGAGGUCcuGUCGaGCGUCGAc-- -3' miRNA: 3'- -CgGC-CUCUCCAG--CAGC-CGCAGCUcag -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 87749 | 0.68 | 0.820855 |
Target: 5'- uGCUGGcGAGGUUGUgcgauaucugccCGGUGgCGGGUCc -3' miRNA: 3'- -CGGCCuCUCCAGCA------------GCCGCaGCUCAG- -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 85798 | 0.68 | 0.828853 |
Target: 5'- aGgCGcGAGAaccGG-CGUCGGCGagagucUCGAGUCg -3' miRNA: 3'- -CgGC-CUCU---CCaGCAGCCGC------AGCUCAG- -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 174361 | 0.68 | 0.828853 |
Target: 5'- cGCCGGAGGagauGGUgGUaguggugaCGGUGUCGuucauGGUCg -3' miRNA: 3'- -CGGCCUCU----CCAgCA--------GCCGCAGC-----UCAG- -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 64206 | 0.67 | 0.844366 |
Target: 5'- gGCgGGcGGAGGcagUGUCGGCGgCGAGg- -3' miRNA: 3'- -CGgCC-UCUCCa--GCAGCCGCaGCUCag -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 68656 | 0.67 | 0.844366 |
Target: 5'- gGCC-GAGGcGUacgcgcaGUCGGCGUaCGAGUCg -3' miRNA: 3'- -CGGcCUCUcCAg------CAGCCGCA-GCUCAG- -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 201881 | 0.67 | 0.858471 |
Target: 5'- aGCCGGucacgcAGAGGcCGaUGGCGUcccagacCGGGUCu -3' miRNA: 3'- -CGGCC------UCUCCaGCaGCCGCA-------GCUCAG- -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 75642 | 0.67 | 0.882712 |
Target: 5'- cGCCGGggaggagguggaaguGGAGGUCGgcgaGGCGgccgCGGGc- -3' miRNA: 3'- -CGGCC---------------UCUCCAGCag--CCGCa---GCUCag -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 201381 | 0.67 | 0.876025 |
Target: 5'- cGCCGG-GGGGUgccaCGUCGacgcacagaugcgucGCGgCGGGUCg -3' miRNA: 3'- -CGGCCuCUCCA----GCAGC---------------CGCaGCUCAG- -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 228000 | 0.67 | 0.866339 |
Target: 5'- aGCCGGAGAGGUUGUCaccUGUC-AGa- -3' miRNA: 3'- -CGGCCUCUCCAGCAGcc-GCAGcUCag -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 29445 | 0.67 | 0.866339 |
Target: 5'- uGCCGGGGuAGGUgGcggagaacUUGGCGaUCGAGa- -3' miRNA: 3'- -CGGCCUC-UCCAgC--------AGCCGC-AGCUCag -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 98499 | 0.66 | 0.88663 |
Target: 5'- cGCCGucccGAGccGUCGUCGGCacccucgauccUCGAGUCc -3' miRNA: 3'- -CGGC----CUCucCAGCAGCCGc----------AGCUCAG- -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 138433 | 0.66 | 0.899166 |
Target: 5'- cGCCGugcguccucGAGGGGUCGg-GGCGggCGAG-Ca -3' miRNA: 3'- -CGGC---------CUCUCCAGCagCCGCa-GCUCaG- -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 96844 | 0.66 | 0.914783 |
Target: 5'- cCCGGGGAGugcagcgucGccacgcgucgcggcUCGUCGGCGgaCGAGUCc -3' miRNA: 3'- cGGCCUCUC---------C--------------AGCAGCCGCa-GCUCAG- -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 61241 | 0.66 | 0.899166 |
Target: 5'- gGgCGGAGAGGaaggCGUCgaaggccugcgcGGCGUCGAc-- -3' miRNA: 3'- -CgGCCUCUCCa---GCAG------------CCGCAGCUcag -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 216872 | 0.66 | 0.899166 |
Target: 5'- aCCGGuuuGAcGGUCGUucgCGGCGgcgCGAGg- -3' miRNA: 3'- cGGCCu--CU-CCAGCA---GCCGCa--GCUCag -5' |
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15671 | 5' | -58.7 | NC_004065.1 | + | 164638 | 0.66 | 0.905127 |
Target: 5'- cUCGGAGgaacagucGGGUCG-CGGCG-CGcGUCg -3' miRNA: 3'- cGGCCUC--------UCCAGCaGCCGCaGCuCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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