Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15672 | 3' | -57 | NC_004065.1 | + | 98241 | 0.68 | 0.858163 |
Target: 5'- --gAG-GGUGCCgaCGACGGCUCGGg -3' miRNA: 3'- cugUCgCCGUGGaaGCUGCUGAGCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 75806 | 0.68 | 0.850629 |
Target: 5'- cGGCGGCgaGGCACCUggcaCGACGACagaugaGGg -3' miRNA: 3'- -CUGUCG--CCGUGGAa---GCUGCUGag----CCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 174479 | 0.68 | 0.872656 |
Target: 5'- -uCGGCGG-ACCUUUGACu-CUCGGUc -3' miRNA: 3'- cuGUCGCCgUGGAAGCUGcuGAGCCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 163152 | 0.68 | 0.842909 |
Target: 5'- gGACAGCGGCucgucguCCggaUCGGCGGCccaGGg -3' miRNA: 3'- -CUGUCGCCGu------GGa--AGCUGCUGag-CCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 82599 | 0.68 | 0.879604 |
Target: 5'- -uCGGCGaGCACCaggUUGACGACcUGGUc -3' miRNA: 3'- cuGUCGC-CGUGGa--AGCUGCUGaGCCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 61648 | 0.68 | 0.879604 |
Target: 5'- aGACGGuUGGCGCUggaGACGAUggCGGUg -3' miRNA: 3'- -CUGUC-GCCGUGGaagCUGCUGa-GCCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 170288 | 0.68 | 0.865508 |
Target: 5'- cGCGGuCGGCACCaUCGccgcCGGgUCGGUa -3' miRNA: 3'- cUGUC-GCCGUGGaAGCu---GCUgAGCCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 1428 | 0.69 | 0.810314 |
Target: 5'- cGGCAGCGGCGCC---GACGACacaaUGGg -3' miRNA: 3'- -CUGUCGCCGUGGaagCUGCUGa---GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 62094 | 0.69 | 0.818707 |
Target: 5'- cGACAGCGGCgcgacGCCUuguUUGACGACgccgUCGaGUc -3' miRNA: 3'- -CUGUCGCCG-----UGGA---AGCUGCUG----AGC-CA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 76622 | 0.69 | 0.826942 |
Target: 5'- cGCGGCGGCGCCggcgCGAUGGagaUCGa- -3' miRNA: 3'- cUGUCGCCGUGGaa--GCUGCUg--AGCca -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 56125 | 0.69 | 0.818707 |
Target: 5'- cGACGGCGGCgcucGCCUUCuGCaGcCUCGGc -3' miRNA: 3'- -CUGUCGCCG----UGGAAGcUG-CuGAGCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 152309 | 0.69 | 0.818707 |
Target: 5'- cGGCGGCGGUGCCggCGGgGACgaugaCGGc -3' miRNA: 3'- -CUGUCGCCGUGGaaGCUgCUGa----GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 36209 | 0.7 | 0.784262 |
Target: 5'- aGCAGCGGCGCgagucCGACGACcugCGGc -3' miRNA: 3'- cUGUCGCCGUGgaa--GCUGCUGa--GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 113772 | 0.7 | 0.793084 |
Target: 5'- cGCGGCGGCAga--CGAcCGACUCGGg -3' miRNA: 3'- cUGUCGCCGUggaaGCU-GCUGAGCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 35626 | 0.7 | 0.793084 |
Target: 5'- cGGCGGCGGCGgCggggaugucaUCGGCGACagGGUc -3' miRNA: 3'- -CUGUCGCCGUgGa---------AGCUGCUGagCCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 48104 | 0.7 | 0.793084 |
Target: 5'- uGGCGGCGGCGgUggCGGCGGCggUGGg -3' miRNA: 3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 200281 | 0.7 | 0.793084 |
Target: 5'- cGCGGaaCGGCACCUgccccUGACGACcgCGGUg -3' miRNA: 3'- cUGUC--GCCGUGGAa----GCUGCUGa-GCCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 154152 | 0.7 | 0.766244 |
Target: 5'- gGGCGGUGGCGgCggCGGCGGCggCGGc -3' miRNA: 3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 141111 | 0.7 | 0.775312 |
Target: 5'- -uCAGCGGCAUCgcCGACGcGCUCaGGUu -3' miRNA: 3'- cuGUCGCCGUGGaaGCUGC-UGAG-CCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 166158 | 0.7 | 0.793959 |
Target: 5'- cGGCAGCGGCGCCgacgucgugcaccgCGAUGugUCuGa -3' miRNA: 3'- -CUGUCGCCGUGGaa------------GCUGCugAGcCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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