miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 27282 0.71 0.738404
Target:  5'- aGAcCGGCGGCGCCgcCGACGACgCGu- -3'
miRNA:   3'- -CU-GUCGCCGUGGaaGCUGCUGaGCca -5'
15672 3' -57 NC_004065.1 + 163487 0.71 0.719399
Target:  5'- -uCGGCGGCGCCgguggCGGCGGCuucaauucuUCGGa -3'
miRNA:   3'- cuGUCGCCGUGGaa---GCUGCUG---------AGCCa -5'
15672 3' -57 NC_004065.1 + 118098 0.71 0.700115
Target:  5'- cGACGGCGGCGCCcaUGGCGucuCUCGu- -3'
miRNA:   3'- -CUGUCGCCGUGGaaGCUGCu--GAGCca -5'
15672 3' -57 NC_004065.1 + 116136 0.71 0.700115
Target:  5'- --uGGuCGGCGuCCUgCGGCGGCUCGGg -3'
miRNA:   3'- cugUC-GCCGU-GGAaGCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 73972 0.71 0.719399
Target:  5'- aGCAGUGGCGCCagcagCGGCGGCggaGGa -3'
miRNA:   3'- cUGUCGCCGUGGaa---GCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 128571 0.71 0.690389
Target:  5'- cGCAGCGGCAgCgacgUCGGCGGCgaaGGc -3'
miRNA:   3'- cUGUCGCCGUgGa---AGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 96769 0.71 0.738404
Target:  5'- cGGCggaGGCGGCAucgcggccgUCUUCGACGACUCuuGGa -3'
miRNA:   3'- -CUG---UCGCCGU---------GGAAGCUGCUGAG--CCa -5'
15672 3' -57 NC_004065.1 + 199648 0.71 0.738404
Target:  5'- --gAGCGGCACCUggGACGAgaUGGa -3'
miRNA:   3'- cugUCGCCGUGGAagCUGCUgaGCCa -5'
15672 3' -57 NC_004065.1 + 24847 0.71 0.738404
Target:  5'- cGGCGGCGGCGgUggCGGCGACgacacgcgCGGa -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-------GCCa -5'
15672 3' -57 NC_004065.1 + 27400 0.71 0.738404
Target:  5'- aGCGGCGGCAUCgUCGuCGACUCc-- -3'
miRNA:   3'- cUGUCGCCGUGGaAGCuGCUGAGcca -5'
15672 3' -57 NC_004065.1 + 146298 0.71 0.728941
Target:  5'- cGGCAuccucggucGUGGCGCCUUCGGCGAUgauGGa -3'
miRNA:   3'- -CUGU---------CGCCGUGGAAGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 114867 0.72 0.680618
Target:  5'- gGGC-GCGGCGCC--CGACGACgauggCGGUg -3'
miRNA:   3'- -CUGuCGCCGUGGaaGCUGCUGa----GCCA- -5'
15672 3' -57 NC_004065.1 + 67018 0.72 0.679639
Target:  5'- aGCGGCGGCGCCggCGccuccucGCGAUUcCGGUa -3'
miRNA:   3'- cUGUCGCCGUGGaaGC-------UGCUGA-GCCA- -5'
15672 3' -57 NC_004065.1 + 146818 0.72 0.67081
Target:  5'- --gAGCGGCACCUUacccgcgacgcCGACGAUgUCGGg -3'
miRNA:   3'- cugUCGCCGUGGAA-----------GCUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 59954 0.73 0.591915
Target:  5'- cGCGGCcgcucGGCGCCcuucuaCGACGACUCGGa -3'
miRNA:   3'- cUGUCG-----CCGUGGaa----GCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 30054 0.73 0.601751
Target:  5'- gGACAGCGGCAgCguuaucgUUGAUGGCggCGGUg -3'
miRNA:   3'- -CUGUCGCCGUgGa------AGCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 127136 0.73 0.600767
Target:  5'- cGGCGGCGGCGCUacCGGCGGCggcgaucgcccucUCGGUc -3'
miRNA:   3'- -CUGUCGCCGUGGaaGCUGCUG-------------AGCCA- -5'
15672 3' -57 NC_004065.1 + 24530 0.74 0.543263
Target:  5'- uGGCGGCGGCAgCgaCGACGGCagCGGa -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 201868 0.74 0.524154
Target:  5'- cACGG-GGCGCagcuccugguCUUCGACGACUCGGg -3'
miRNA:   3'- cUGUCgCCGUG----------GAAGCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 88674 0.75 0.486759
Target:  5'- cGACGGCGGCgggcuccgcuGCCggcggUGGCGGCUCGGc -3'
miRNA:   3'- -CUGUCGCCG----------UGGaa---GCUGCUGAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.