miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 123037 0.67 0.892879
Target:  5'- cGACGGCGcuGCGCCUUC--CG-CUCGGg -3'
miRNA:   3'- -CUGUCGC--CGUGGAAGcuGCuGAGCCa -5'
15672 3' -57 NC_004065.1 + 91658 0.67 0.886346
Target:  5'- aACAGCGGCGCga-UGACGACggGGg -3'
miRNA:   3'- cUGUCGCCGUGgaaGCUGCUGagCCa -5'
15672 3' -57 NC_004065.1 + 98262 0.66 0.932515
Target:  5'- gGACGGCGGC-CCUgggCGcGCGcCUCGcGg -3'
miRNA:   3'- -CUGUCGCCGuGGAa--GC-UGCuGAGC-Ca -5'
15672 3' -57 NC_004065.1 + 62491 0.66 0.932025
Target:  5'- cGCGGCGGUAgcguuggUCUUCGGC-AUUCGGg -3'
miRNA:   3'- cUGUCGCCGU-------GGAAGCUGcUGAGCCa -5'
15672 3' -57 NC_004065.1 + 67130 0.66 0.93729
Target:  5'- gGACAGCGGCgcgcGCCUggaCG-CGAUcgCGGa -3'
miRNA:   3'- -CUGUCGCCG----UGGAa--GCuGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 200787 0.66 0.927517
Target:  5'- cGCGGCGGUGgCgggCGACGGCgucUCGGc -3'
miRNA:   3'- cUGUCGCCGUgGaa-GCUGCUG---AGCCa -5'
15672 3' -57 NC_004065.1 + 68767 0.66 0.927005
Target:  5'- cGCGGCGGUgcuggcgGCCUUCaaGGcCGugUCGGa -3'
miRNA:   3'- cUGUCGCCG-------UGGAAG--CU-GCugAGCCa -5'
15672 3' -57 NC_004065.1 + 45986 0.66 0.927517
Target:  5'- aACGGCgaccugGGCGCCguggCGGCGuugaACUCGGg -3'
miRNA:   3'- cUGUCG------CCGUGGaa--GCUGC----UGAGCCa -5'
15672 3' -57 NC_004065.1 + 76926 0.66 0.922297
Target:  5'- gGACGGCGGCGCCgacgCGAucCGuuUCGa- -3'
miRNA:   3'- -CUGUCGCCGUGGaa--GCU--GCugAGCca -5'
15672 3' -57 NC_004065.1 + 230201 0.66 0.927517
Target:  5'- uGCcGCGGCGCCcUCGGCGGCa---- -3'
miRNA:   3'- cUGuCGCCGUGGaAGCUGCUGagcca -5'
15672 3' -57 NC_004065.1 + 115837 0.66 0.932515
Target:  5'- --gAGCGGcCGCCUccuccUCGuACGAgUCGGg -3'
miRNA:   3'- cugUCGCC-GUGGA-----AGC-UGCUgAGCCa -5'
15672 3' -57 NC_004065.1 + 78581 0.66 0.93729
Target:  5'- cGACAGUGGCAacagCGACGGCg-GGc -3'
miRNA:   3'- -CUGUCGCCGUggaaGCUGCUGagCCa -5'
15672 3' -57 NC_004065.1 + 56647 0.66 0.922297
Target:  5'- cGGCcGCGGCACCcuucaccgucggUUCGACGuuCUCGu- -3'
miRNA:   3'- -CUGuCGCCGUGG------------AAGCUGCu-GAGCca -5'
15672 3' -57 NC_004065.1 + 151092 0.66 0.927517
Target:  5'- gGGCcuGGUGGCGCCcgagcUCGGCGACgaCGGc -3'
miRNA:   3'- -CUG--UCGCCGUGGa----AGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 70507 0.66 0.922297
Target:  5'- cGAUGGCGGCGCCcuucUCGACGgaGCUgcaGGc -3'
miRNA:   3'- -CUGUCGCCGUGGa---AGCUGC--UGAg--CCa -5'
15672 3' -57 NC_004065.1 + 121312 0.66 0.941844
Target:  5'- gGGCAGCGGCcCCgcacUCGG-GGCUCGu- -3'
miRNA:   3'- -CUGUCGCCGuGGa---AGCUgCUGAGCca -5'
15672 3' -57 NC_004065.1 + 29976 0.66 0.941844
Target:  5'- uGGCGGCGGCGg---CGGCGGCagUGGUa -3'
miRNA:   3'- -CUGUCGCCGUggaaGCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 20718 0.66 0.941844
Target:  5'- cACGaCGGCACCgaCGGCGACgaCGGc -3'
miRNA:   3'- cUGUcGCCGUGGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 201171 0.66 0.941399
Target:  5'- cGCAGCaGCGCCgacaccaagCGGCGcgucccgGCUCGGg -3'
miRNA:   3'- cUGUCGcCGUGGaa-------GCUGC-------UGAGCCa -5'
15672 3' -57 NC_004065.1 + 202480 0.66 0.927517
Target:  5'- gGAgAGCGGCACCaagCucUGugUCGGg -3'
miRNA:   3'- -CUgUCGCCGUGGaa-GcuGCugAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.