miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 163152 0.68 0.842909
Target:  5'- gGACAGCGGCucgucguCCggaUCGGCGGCccaGGg -3'
miRNA:   3'- -CUGUCGCCGu------GGa--AGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 58318 0.68 0.850629
Target:  5'- gGGCGGUGGCGgCggCGGCGGCggaGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 58012 0.68 0.850629
Target:  5'- cGACGGCGGCGgCgaCGACGAuCUCu-- -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCU-GAGcca -5'
15672 3' -57 NC_004065.1 + 75806 0.68 0.850629
Target:  5'- cGGCGGCgaGGCACCUggcaCGACGACagaugaGGg -3'
miRNA:   3'- -CUGUCG--CCGUGGAa---GCUGCUGag----CCa -5'
15672 3' -57 NC_004065.1 + 169818 0.68 0.855923
Target:  5'- cGACAGCGGCaacagcgcgcagaaACCga-GACGGCggCGGc -3'
miRNA:   3'- -CUGUCGCCG--------------UGGaagCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 98241 0.68 0.858163
Target:  5'- --gAG-GGUGCCgaCGACGGCUCGGg -3'
miRNA:   3'- cugUCgCCGUGGaaGCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 38308 0.68 0.858163
Target:  5'- -cCGGCGGCACgUUgGACGGgUCGuGg -3'
miRNA:   3'- cuGUCGCCGUGgAAgCUGCUgAGC-Ca -5'
15672 3' -57 NC_004065.1 + 87006 0.68 0.858163
Target:  5'- cGGgGGCGGCAgCUUCaagggccgaGGCGGCgUCGGg -3'
miRNA:   3'- -CUgUCGCCGUgGAAG---------CUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 118430 0.68 0.864782
Target:  5'- aACGGCGGCAgCcgUGACGGCcgccgccgcggucUCGGUg -3'
miRNA:   3'- cUGUCGCCGUgGaaGCUGCUG-------------AGCCA- -5'
15672 3' -57 NC_004065.1 + 24841 0.68 0.865508
Target:  5'- cGCAcGCGGCGCCcgauguuggCGGCGACggCGGc -3'
miRNA:   3'- cUGU-CGCCGUGGaa-------GCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 45115 0.68 0.865508
Target:  5'- -cCAGCGGCGgCgaaGGCGACUCGu- -3'
miRNA:   3'- cuGUCGCCGUgGaagCUGCUGAGCca -5'
15672 3' -57 NC_004065.1 + 170288 0.68 0.865508
Target:  5'- cGCGGuCGGCACCaUCGccgcCGGgUCGGUa -3'
miRNA:   3'- cUGUC-GCCGUGGaAGCu---GCUgAGCCA- -5'
15672 3' -57 NC_004065.1 + 201936 0.68 0.865508
Target:  5'- cGACAGCGGCACCcuguaGAUGAaCUCc-- -3'
miRNA:   3'- -CUGUCGCCGUGGaag--CUGCU-GAGcca -5'
15672 3' -57 NC_004065.1 + 118390 0.68 0.865508
Target:  5'- uACAGCGGCgucaucAUCUUCGGCG--UCGGg -3'
miRNA:   3'- cUGUCGCCG------UGGAAGCUGCugAGCCa -5'
15672 3' -57 NC_004065.1 + 121422 0.68 0.870532
Target:  5'- gGACGGCGGCuucagcggauggGCgcucggguucgacaCUUCGACGACcaggUCGGUc -3'
miRNA:   3'- -CUGUCGCCG------------UG--------------GAAGCUGCUG----AGCCA- -5'
15672 3' -57 NC_004065.1 + 28018 0.68 0.872656
Target:  5'- aGACGGCGGCGCagcgucUCGAUGcGCggCGGg -3'
miRNA:   3'- -CUGUCGCCGUGga----AGCUGC-UGa-GCCa -5'
15672 3' -57 NC_004065.1 + 163679 0.68 0.872656
Target:  5'- cGGCGGCGGcCACCgcggcguugcCGACGcuCUCGGc -3'
miRNA:   3'- -CUGUCGCC-GUGGaa--------GCUGCu-GAGCCa -5'
15672 3' -57 NC_004065.1 + 174479 0.68 0.872656
Target:  5'- -uCGGCGG-ACCUUUGACu-CUCGGUc -3'
miRNA:   3'- cuGUCGCCgUGGAAGCUGcuGAGCCA- -5'
15672 3' -57 NC_004065.1 + 212851 0.68 0.872656
Target:  5'- gGAUAGCGaGUAUCgugUCGAgcCGAUUCGGg -3'
miRNA:   3'- -CUGUCGC-CGUGGa--AGCU--GCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 82599 0.68 0.879604
Target:  5'- -uCGGCGaGCACCaggUUGACGACcUGGUc -3'
miRNA:   3'- cuGUCGC-CGUGGa--AGCUGCUGaGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.