miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 56125 0.69 0.818707
Target:  5'- cGACGGCGGCgcucGCCUUCuGCaGcCUCGGc -3'
miRNA:   3'- -CUGUCGCCG----UGGAAGcUG-CuGAGCCa -5'
15672 3' -57 NC_004065.1 + 56647 0.66 0.922297
Target:  5'- cGGCcGCGGCACCcuucaccgucggUUCGACGuuCUCGu- -3'
miRNA:   3'- -CUGuCGCCGUGG------------AAGCUGCu-GAGCca -5'
15672 3' -57 NC_004065.1 + 58012 0.68 0.850629
Target:  5'- cGACGGCGGCGgCgaCGACGAuCUCu-- -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCU-GAGcca -5'
15672 3' -57 NC_004065.1 + 58318 0.68 0.850629
Target:  5'- gGGCGGUGGCGgCggCGGCGGCggaGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 59954 0.73 0.591915
Target:  5'- cGCGGCcgcucGGCGCCcuucuaCGACGACUCGGa -3'
miRNA:   3'- cUGUCG-----CCGUGGaa----GCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 61648 0.68 0.879604
Target:  5'- aGACGGuUGGCGCUggaGACGAUggCGGUg -3'
miRNA:   3'- -CUGUC-GCCGUGGaagCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 62094 0.69 0.818707
Target:  5'- cGACAGCGGCgcgacGCCUuguUUGACGACgccgUCGaGUc -3'
miRNA:   3'- -CUGUCGCCG-----UGGA---AGCUGCUG----AGC-CA- -5'
15672 3' -57 NC_004065.1 + 62491 0.66 0.932025
Target:  5'- cGCGGCGGUAgcguuggUCUUCGGC-AUUCGGg -3'
miRNA:   3'- cUGUCGCCGU-------GGAAGCUGcUGAGCCa -5'
15672 3' -57 NC_004065.1 + 67018 0.72 0.679639
Target:  5'- aGCGGCGGCGCCggCGccuccucGCGAUUcCGGUa -3'
miRNA:   3'- cUGUCGCCGUGGaaGC-------UGCUGA-GCCA- -5'
15672 3' -57 NC_004065.1 + 67130 0.66 0.93729
Target:  5'- gGACAGCGGCgcgcGCCUggaCG-CGAUcgCGGa -3'
miRNA:   3'- -CUGUCGCCG----UGGAa--GCuGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 67748 0.66 0.920146
Target:  5'- --gAGCGGCGCCgcgucCGACGGCgugacgaacggcgCGGg -3'
miRNA:   3'- cugUCGCCGUGGaa---GCUGCUGa------------GCCa -5'
15672 3' -57 NC_004065.1 + 68167 0.67 0.911188
Target:  5'- cGCGGCGGCGCgcgCGACGGagcugUCGGc -3'
miRNA:   3'- cUGUCGCCGUGgaaGCUGCUg----AGCCa -5'
15672 3' -57 NC_004065.1 + 68767 0.66 0.927005
Target:  5'- cGCGGCGGUgcuggcgGCCUUCaaGGcCGugUCGGa -3'
miRNA:   3'- cUGUCGCCG-------UGGAAG--CU-GCugAGCCa -5'
15672 3' -57 NC_004065.1 + 70102 0.67 0.916853
Target:  5'- cGACgAGCaGCACCggcagCGGCGGCggCGGc -3'
miRNA:   3'- -CUG-UCGcCGUGGaa---GCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 70507 0.66 0.922297
Target:  5'- cGAUGGCGGCGCCcuucUCGACGgaGCUgcaGGc -3'
miRNA:   3'- -CUGUCGCCGUGGa---AGCUGC--UGAg--CCa -5'
15672 3' -57 NC_004065.1 + 73972 0.71 0.719399
Target:  5'- aGCAGUGGCGCCagcagCGGCGGCggaGGa -3'
miRNA:   3'- cUGUCGCCGUGGaa---GCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 75806 0.68 0.850629
Target:  5'- cGGCGGCgaGGCACCUggcaCGACGACagaugaGGg -3'
miRNA:   3'- -CUGUCG--CCGUGGAa---GCUGCUGag----CCa -5'
15672 3' -57 NC_004065.1 + 76622 0.69 0.826942
Target:  5'- cGCGGCGGCGCCggcgCGAUGGagaUCGa- -3'
miRNA:   3'- cUGUCGCCGUGGaa--GCUGCUg--AGCca -5'
15672 3' -57 NC_004065.1 + 76926 0.66 0.922297
Target:  5'- gGACGGCGGCGCCgacgCGAucCGuuUCGa- -3'
miRNA:   3'- -CUGUCGCCGUGGaa--GCU--GCugAGCca -5'
15672 3' -57 NC_004065.1 + 77013 0.67 0.886346
Target:  5'- aGGCGGCGuGCugCgaccuCGACUCGGa -3'
miRNA:   3'- -CUGUCGC-CGugGaagcuGCUGAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.