miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 118430 0.68 0.864782
Target:  5'- aACGGCGGCAgCcgUGACGGCcgccgccgcggucUCGGUg -3'
miRNA:   3'- cUGUCGCCGUgGaaGCUGCUG-------------AGCCA- -5'
15672 3' -57 NC_004065.1 + 121312 0.66 0.941844
Target:  5'- gGGCAGCGGCcCCgcacUCGG-GGCUCGu- -3'
miRNA:   3'- -CUGUCGCCGuGGa---AGCUgCUGAGCca -5'
15672 3' -57 NC_004065.1 + 121422 0.68 0.870532
Target:  5'- gGACGGCGGCuucagcggauggGCgcucggguucgacaCUUCGACGACcaggUCGGUc -3'
miRNA:   3'- -CUGUCGCCG------------UG--------------GAAGCUGCUG----AGCCA- -5'
15672 3' -57 NC_004065.1 + 123037 0.67 0.892879
Target:  5'- cGACGGCGcuGCGCCUUC--CG-CUCGGg -3'
miRNA:   3'- -CUGUCGC--CGUGGAAGcuGCuGAGCCa -5'
15672 3' -57 NC_004065.1 + 127136 0.73 0.600767
Target:  5'- cGGCGGCGGCGCUacCGGCGGCggcgaucgcccucUCGGUc -3'
miRNA:   3'- -CUGUCGCCGUGGaaGCUGCUG-------------AGCCA- -5'
15672 3' -57 NC_004065.1 + 128571 0.71 0.690389
Target:  5'- cGCAGCGGCAgCgacgUCGGCGGCgaaGGc -3'
miRNA:   3'- cUGUCGCCGUgGa---AGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 141111 0.7 0.775312
Target:  5'- -uCAGCGGCAUCgcCGACGcGCUCaGGUu -3'
miRNA:   3'- cuGUCGCCGUGGaaGCUGC-UGAG-CCA- -5'
15672 3' -57 NC_004065.1 + 143192 0.67 0.886346
Target:  5'- gGGCAGCuGGC-CCUggugccggaacUCGACGGC-CGGc -3'
miRNA:   3'- -CUGUCG-CCGuGGA-----------AGCUGCUGaGCCa -5'
15672 3' -57 NC_004065.1 + 143705 0.66 0.927517
Target:  5'- cGACgcagAGCGGCACC-UCGuCGcAgUCGGa -3'
miRNA:   3'- -CUG----UCGCCGUGGaAGCuGC-UgAGCCa -5'
15672 3' -57 NC_004065.1 + 145327 0.66 0.932515
Target:  5'- --uGGCGGCGCaCUUCccCGGCaUCGGUu -3'
miRNA:   3'- cugUCGCCGUG-GAAGcuGCUG-AGCCA- -5'
15672 3' -57 NC_004065.1 + 145426 0.67 0.91061
Target:  5'- cGGCGGCGGCGCUuagggaaucgcgaUggagaggCGAUGGCgUCGGg -3'
miRNA:   3'- -CUGUCGCCGUGG-------------Aa------GCUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 146298 0.71 0.728941
Target:  5'- cGGCAuccucggucGUGGCGCCUUCGGCGAUgauGGa -3'
miRNA:   3'- -CUGU---------CGCCGUGGAAGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 146818 0.72 0.67081
Target:  5'- --gAGCGGCACCUUacccgcgacgcCGACGAUgUCGGg -3'
miRNA:   3'- cugUCGCCGUGGAA-----------GCUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 148637 0.67 0.905303
Target:  5'- gGACAGCGGCAgCgacUCGAUGGCg---- -3'
miRNA:   3'- -CUGUCGCCGUgGa--AGCUGCUGagcca -5'
15672 3' -57 NC_004065.1 + 149485 0.75 0.468538
Target:  5'- cGACGGCGGCGgCggCGGCGGCagCGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 151092 0.66 0.927517
Target:  5'- gGGCcuGGUGGCGCCcgagcUCGGCGACgaCGGc -3'
miRNA:   3'- -CUG--UCGCCGUGGa----AGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 151134 0.67 0.886346
Target:  5'- aGGCGGCGGCaacGCCg-CGAUGAUcgUCGGc -3'
miRNA:   3'- -CUGUCGCCG---UGGaaGCUGCUG--AGCCa -5'
15672 3' -57 NC_004065.1 + 152309 0.69 0.818707
Target:  5'- cGGCGGCGGUGCCggCGGgGACgaugaCGGc -3'
miRNA:   3'- -CUGUCGCCGUGGaaGCUgCUGa----GCCa -5'
15672 3' -57 NC_004065.1 + 152451 0.67 0.905303
Target:  5'- uACAcCGGCACUUUCGACGAuUUCGc- -3'
miRNA:   3'- cUGUcGCCGUGGAAGCUGCU-GAGCca -5'
15672 3' -57 NC_004065.1 + 154152 0.7 0.766244
Target:  5'- gGGCGGUGGCGgCggCGGCGGCggCGGc -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.