miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 159470 0.67 0.911188
Target:  5'- aGACGuCGGCGCgUUCGGCGGagaCGGa -3'
miRNA:   3'- -CUGUcGCCGUGgAAGCUGCUga-GCCa -5'
15672 3' -57 NC_004065.1 + 163152 0.68 0.842909
Target:  5'- gGACAGCGGCucgucguCCggaUCGGCGGCccaGGg -3'
miRNA:   3'- -CUGUCGCCGu------GGa--AGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 163487 0.71 0.719399
Target:  5'- -uCGGCGGCGCCgguggCGGCGGCuucaauucuUCGGa -3'
miRNA:   3'- cuGUCGCCGUGGaa---GCUGCUG---------AGCCa -5'
15672 3' -57 NC_004065.1 + 163679 0.68 0.872656
Target:  5'- cGGCGGCGGcCACCgcggcguugcCGACGcuCUCGGc -3'
miRNA:   3'- -CUGUCGCC-GUGGaa--------GCUGCu-GAGCCa -5'
15672 3' -57 NC_004065.1 + 164811 0.68 0.879604
Target:  5'- aGCGGuCGGCGCCgcCGcCGGCUCGa- -3'
miRNA:   3'- cUGUC-GCCGUGGaaGCuGCUGAGCca -5'
15672 3' -57 NC_004065.1 + 166158 0.7 0.793959
Target:  5'- cGGCAGCGGCGCCgacgucgugcaccgCGAUGugUCuGa -3'
miRNA:   3'- -CUGUCGCCGUGGaa------------GCUGCugAGcCa -5'
15672 3' -57 NC_004065.1 + 168557 0.76 0.433191
Target:  5'- uGGCAGCGGCGgCggCGGCGACagCGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 169818 0.68 0.855923
Target:  5'- cGACAGCGGCaacagcgcgcagaaACCga-GACGGCggCGGc -3'
miRNA:   3'- -CUGUCGCCG--------------UGGaagCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 170288 0.68 0.865508
Target:  5'- cGCGGuCGGCACCaUCGccgcCGGgUCGGUa -3'
miRNA:   3'- cUGUC-GCCGUGGaAGCu---GCUgAGCCA- -5'
15672 3' -57 NC_004065.1 + 170704 0.67 0.911188
Target:  5'- cGGCAGCgaaGGCGCCUcCGGCGGCg---- -3'
miRNA:   3'- -CUGUCG---CCGUGGAaGCUGCUGagcca -5'
15672 3' -57 NC_004065.1 + 174479 0.68 0.872656
Target:  5'- -uCGGCGG-ACCUUUGACu-CUCGGUc -3'
miRNA:   3'- cuGUCGCCgUGGAAGCUGcuGAGCCA- -5'
15672 3' -57 NC_004065.1 + 194561 0.67 0.916853
Target:  5'- aGAC--UGGUACCgcUGGCGACUCGGc -3'
miRNA:   3'- -CUGucGCCGUGGaaGCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 194713 0.67 0.919057
Target:  5'- aGCGGCGGCGCCgccgugcccaaccgcUUCGACcgaGGCgccCGGg -3'
miRNA:   3'- cUGUCGCCGUGG---------------AAGCUG---CUGa--GCCa -5'
15672 3' -57 NC_004065.1 + 195155 0.67 0.911188
Target:  5'- aGACGGCGGCGCC---GugGuCUCGa- -3'
miRNA:   3'- -CUGUCGCCGUGGaagCugCuGAGCca -5'
15672 3' -57 NC_004065.1 + 195730 0.66 0.932515
Target:  5'- cGACAGCGagaGCGacucagaCUUCGACauggagucgGACUCGGa -3'
miRNA:   3'- -CUGUCGC---CGUg------GAAGCUG---------CUGAGCCa -5'
15672 3' -57 NC_004065.1 + 197962 0.67 0.911188
Target:  5'- cACGGCGGC-Cg--CGACGGCgUCGGa -3'
miRNA:   3'- cUGUCGCCGuGgaaGCUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 199648 0.71 0.738404
Target:  5'- --gAGCGGCACCUggGACGAgaUGGa -3'
miRNA:   3'- cugUCGCCGUGGAagCUGCUgaGCCa -5'
15672 3' -57 NC_004065.1 + 200281 0.7 0.793084
Target:  5'- cGCGGaaCGGCACCUgccccUGACGACcgCGGUg -3'
miRNA:   3'- cUGUC--GCCGUGGAa----GCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 200787 0.66 0.927517
Target:  5'- cGCGGCGGUGgCgggCGACGGCgucUCGGc -3'
miRNA:   3'- cUGUCGCCGUgGaa-GCUGCUG---AGCCa -5'
15672 3' -57 NC_004065.1 + 201171 0.66 0.941399
Target:  5'- cGCAGCaGCGCCgacaccaagCGGCGcgucccgGCUCGGg -3'
miRNA:   3'- cUGUCGcCGUGGaa-------GCUGC-------UGAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.