Results 101 - 107 of 107 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15672 | 3' | -57 | NC_004065.1 | + | 201868 | 0.74 | 0.524154 |
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Target: 5'- cACGG-GGCGCagcuccugguCUUCGACGACUCGGg -3' miRNA: 3'- cUGUCgCCGUG----------GAAGCUGCUGAGCCa -5' |
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| 15672 | 3' | -57 | NC_004065.1 | + | 201936 | 0.68 | 0.865508 |
|
Target: 5'- cGACAGCGGCACCcuguaGAUGAaCUCc-- -3' miRNA: 3'- -CUGUCGCCGUGGaag--CUGCU-GAGcca -5' |
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| 15672 | 3' | -57 | NC_004065.1 | + | 202480 | 0.66 | 0.927517 |
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Target: 5'- gGAgAGCGGCACCaagCucUGugUCGGg -3' miRNA: 3'- -CUgUCGCCGUGGaa-GcuGCugAGCCa -5' |
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| 15672 | 3' | -57 | NC_004065.1 | + | 212851 | 0.68 | 0.872656 |
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Target: 5'- gGAUAGCGaGUAUCgugUCGAgcCGAUUCGGg -3' miRNA: 3'- -CUGUCGC-CGUGGa--AGCU--GCUGAGCCa -5' |
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| 15672 | 3' | -57 | NC_004065.1 | + | 213220 | 0.67 | 0.911188 |
|
Target: 5'- cGACGGCGGC-CgUggaCGAUGGUUCGGUc -3' miRNA: 3'- -CUGUCGCCGuGgAa--GCUGCUGAGCCA- -5' |
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| 15672 | 3' | -57 | NC_004065.1 | + | 226722 | 0.67 | 0.916853 |
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Target: 5'- cGCAGCGGCGCUggcagaaGGCGAgCcCGGUc -3' miRNA: 3'- cUGUCGCCGUGGaag----CUGCU-GaGCCA- -5' |
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| 15672 | 3' | -57 | NC_004065.1 | + | 230201 | 0.66 | 0.927517 |
|
Target: 5'- uGCcGCGGCGCCcUCGGCGGCa---- -3' miRNA: 3'- cUGuCGCCGUGGaAGCUGCUGagcca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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