miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 141111 0.7 0.775312
Target:  5'- -uCAGCGGCAUCgcCGACGcGCUCaGGUu -3'
miRNA:   3'- cuGUCGCCGUGGaaGCUGC-UGAG-CCA- -5'
15672 3' -57 NC_004065.1 + 128571 0.71 0.690389
Target:  5'- cGCAGCGGCAgCgacgUCGGCGGCgaaGGc -3'
miRNA:   3'- cUGUCGCCGUgGa---AGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 127136 0.73 0.600767
Target:  5'- cGGCGGCGGCGCUacCGGCGGCggcgaucgcccucUCGGUc -3'
miRNA:   3'- -CUGUCGCCGUGGaaGCUGCUG-------------AGCCA- -5'
15672 3' -57 NC_004065.1 + 123037 0.67 0.892879
Target:  5'- cGACGGCGcuGCGCCUUC--CG-CUCGGg -3'
miRNA:   3'- -CUGUCGC--CGUGGAAGcuGCuGAGCCa -5'
15672 3' -57 NC_004065.1 + 121422 0.68 0.870532
Target:  5'- gGACGGCGGCuucagcggauggGCgcucggguucgacaCUUCGACGACcaggUCGGUc -3'
miRNA:   3'- -CUGUCGCCG------------UG--------------GAAGCUGCUG----AGCCA- -5'
15672 3' -57 NC_004065.1 + 121312 0.66 0.941844
Target:  5'- gGGCAGCGGCcCCgcacUCGG-GGCUCGu- -3'
miRNA:   3'- -CUGUCGCCGuGGa---AGCUgCUGAGCca -5'
15672 3' -57 NC_004065.1 + 118430 0.68 0.864782
Target:  5'- aACGGCGGCAgCcgUGACGGCcgccgccgcggucUCGGUg -3'
miRNA:   3'- cUGUCGCCGUgGaaGCUGCUG-------------AGCCA- -5'
15672 3' -57 NC_004065.1 + 118390 0.68 0.865508
Target:  5'- uACAGCGGCgucaucAUCUUCGGCG--UCGGg -3'
miRNA:   3'- cUGUCGCCG------UGGAAGCUGCugAGCCa -5'
15672 3' -57 NC_004065.1 + 118098 0.71 0.700115
Target:  5'- cGACGGCGGCGCCcaUGGCGucuCUCGu- -3'
miRNA:   3'- -CUGUCGCCGUGGaaGCUGCu--GAGCca -5'
15672 3' -57 NC_004065.1 + 116136 0.71 0.700115
Target:  5'- --uGGuCGGCGuCCUgCGGCGGCUCGGg -3'
miRNA:   3'- cugUC-GCCGU-GGAaGCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 115837 0.66 0.932515
Target:  5'- --gAGCGGcCGCCUccuccUCGuACGAgUCGGg -3'
miRNA:   3'- cugUCGCC-GUGGA-----AGC-UGCUgAGCCa -5'
15672 3' -57 NC_004065.1 + 115197 0.66 0.927517
Target:  5'- -cCGGCGGCGCCgacUGAUGAUgaucaccggCGGUg -3'
miRNA:   3'- cuGUCGCCGUGGaa-GCUGCUGa--------GCCA- -5'
15672 3' -57 NC_004065.1 + 114867 0.72 0.680618
Target:  5'- gGGC-GCGGCGCC--CGACGACgauggCGGUg -3'
miRNA:   3'- -CUGuCGCCGUGGaaGCUGCUGa----GCCA- -5'
15672 3' -57 NC_004065.1 + 113956 0.8 0.282355
Target:  5'- cGGCGGCGGCAgCggCGACGGCgUCGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 113772 0.7 0.793084
Target:  5'- cGCGGCGGCAga--CGAcCGACUCGGg -3'
miRNA:   3'- cUGUCGCCGUggaaGCU-GCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 110442 0.66 0.927517
Target:  5'- gGGCGGCGGCGCg-UCG-CGGCcgccgcagaggUCGGg -3'
miRNA:   3'- -CUGUCGCCGUGgaAGCuGCUG-----------AGCCa -5'
15672 3' -57 NC_004065.1 + 109199 0.79 0.319275
Target:  5'- cGGCGGCGGCGCCUcggccucuuccugcUCGGCGACgggagacggcggCGGUa -3'
miRNA:   3'- -CUGUCGCCGUGGA--------------AGCUGCUGa-----------GCCA- -5'
15672 3' -57 NC_004065.1 + 100253 0.67 0.916853
Target:  5'- cGGCGGCGGCGgCUacgacgaagaCGACGACccgCGGc -3'
miRNA:   3'- -CUGUCGCCGUgGAa---------GCUGCUGa--GCCa -5'
15672 3' -57 NC_004065.1 + 98262 0.66 0.932515
Target:  5'- gGACGGCGGC-CCUgggCGcGCGcCUCGcGg -3'
miRNA:   3'- -CUGUCGCCGuGGAa--GC-UGCuGAGC-Ca -5'
15672 3' -57 NC_004065.1 + 98241 0.68 0.858163
Target:  5'- --gAG-GGUGCCgaCGACGGCUCGGg -3'
miRNA:   3'- cugUCgCCGUGGaaGCUGCUGAGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.