miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 62094 0.69 0.818707
Target:  5'- cGACAGCGGCgcgacGCCUuguUUGACGACgccgUCGaGUc -3'
miRNA:   3'- -CUGUCGCCG-----UGGA---AGCUGCUG----AGC-CA- -5'
15672 3' -57 NC_004065.1 + 61648 0.68 0.879604
Target:  5'- aGACGGuUGGCGCUggaGACGAUggCGGUg -3'
miRNA:   3'- -CUGUC-GCCGUGGaagCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 59954 0.73 0.591915
Target:  5'- cGCGGCcgcucGGCGCCcuucuaCGACGACUCGGa -3'
miRNA:   3'- cUGUCG-----CCGUGGaa----GCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 58318 0.68 0.850629
Target:  5'- gGGCGGUGGCGgCggCGGCGGCggaGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 58012 0.68 0.850629
Target:  5'- cGACGGCGGCGgCgaCGACGAuCUCu-- -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCU-GAGcca -5'
15672 3' -57 NC_004065.1 + 56647 0.66 0.922297
Target:  5'- cGGCcGCGGCACCcuucaccgucggUUCGACGuuCUCGu- -3'
miRNA:   3'- -CUGuCGCCGUGG------------AAGCUGCu-GAGCca -5'
15672 3' -57 NC_004065.1 + 56125 0.69 0.818707
Target:  5'- cGACGGCGGCgcucGCCUUCuGCaGcCUCGGc -3'
miRNA:   3'- -CUGUCGCCG----UGGAAGcUG-CuGAGCCa -5'
15672 3' -57 NC_004065.1 + 48104 0.7 0.793084
Target:  5'- uGGCGGCGGCGgUggCGGCGGCggUGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 45986 0.66 0.927517
Target:  5'- aACGGCgaccugGGCGCCguggCGGCGuugaACUCGGg -3'
miRNA:   3'- cUGUCG------CCGUGGaa--GCUGC----UGAGCCa -5'
15672 3' -57 NC_004065.1 + 45115 0.68 0.865508
Target:  5'- -cCAGCGGCGgCgaaGGCGACUCGu- -3'
miRNA:   3'- cuGUCGCCGUgGaagCUGCUGAGCca -5'
15672 3' -57 NC_004065.1 + 38308 0.68 0.858163
Target:  5'- -cCGGCGGCACgUUgGACGGgUCGuGg -3'
miRNA:   3'- cuGUCGCCGUGgAAgCUGCUgAGC-Ca -5'
15672 3' -57 NC_004065.1 + 36636 0.65 0.944038
Target:  5'- uGGCGGCGGCAgCgagagcgacgauagCGACGcacucgccugucgugGCUCGGa -3'
miRNA:   3'- -CUGUCGCCGUgGaa------------GCUGC---------------UGAGCCa -5'
15672 3' -57 NC_004065.1 + 36209 0.7 0.784262
Target:  5'- aGCAGCGGCGCgagucCGACGACcugCGGc -3'
miRNA:   3'- cUGUCGCCGUGgaa--GCUGCUGa--GCCa -5'
15672 3' -57 NC_004065.1 + 35626 0.7 0.793084
Target:  5'- cGGCGGCGGCGgCggggaugucaUCGGCGACagGGUc -3'
miRNA:   3'- -CUGUCGCCGUgGa---------AGCUGCUGagCCA- -5'
15672 3' -57 NC_004065.1 + 30054 0.73 0.601751
Target:  5'- gGACAGCGGCAgCguuaucgUUGAUGGCggCGGUg -3'
miRNA:   3'- -CUGUCGCCGUgGa------AGCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 29976 0.66 0.941844
Target:  5'- uGGCGGCGGCGg---CGGCGGCagUGGUa -3'
miRNA:   3'- -CUGUCGCCGUggaaGCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 28018 0.68 0.872656
Target:  5'- aGACGGCGGCGCagcgucUCGAUGcGCggCGGg -3'
miRNA:   3'- -CUGUCGCCGUGga----AGCUGC-UGa-GCCa -5'
15672 3' -57 NC_004065.1 + 27400 0.71 0.738404
Target:  5'- aGCGGCGGCAUCgUCGuCGACUCc-- -3'
miRNA:   3'- cUGUCGCCGUGGaAGCuGCUGAGcca -5'
15672 3' -57 NC_004065.1 + 27282 0.71 0.738404
Target:  5'- aGAcCGGCGGCGCCgcCGACGACgCGu- -3'
miRNA:   3'- -CU-GUCGCCGUGGaaGCUGCUGaGCca -5'
15672 3' -57 NC_004065.1 + 24847 0.71 0.738404
Target:  5'- cGGCGGCGGCGgUggCGGCGACgacacgcgCGGa -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-------GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.