miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 152309 0.69 0.818707
Target:  5'- cGGCGGCGGUGCCggCGGgGACgaugaCGGc -3'
miRNA:   3'- -CUGUCGCCGUGGaaGCUgCUGa----GCCa -5'
15672 3' -57 NC_004065.1 + 56125 0.69 0.818707
Target:  5'- cGACGGCGGCgcucGCCUUCuGCaGcCUCGGc -3'
miRNA:   3'- -CUGUCGCCG----UGGAAGcUG-CuGAGCCa -5'
15672 3' -57 NC_004065.1 + 118098 0.71 0.700115
Target:  5'- cGACGGCGGCGCCcaUGGCGucuCUCGu- -3'
miRNA:   3'- -CUGUCGCCGUGGaaGCUGCu--GAGCca -5'
15672 3' -57 NC_004065.1 + 116136 0.71 0.700115
Target:  5'- --uGGuCGGCGuCCUgCGGCGGCUCGGg -3'
miRNA:   3'- cugUC-GCCGU-GGAaGCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 128571 0.71 0.690389
Target:  5'- cGCAGCGGCAgCgacgUCGGCGGCgaaGGc -3'
miRNA:   3'- cUGUCGCCGUgGa---AGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 114867 0.72 0.680618
Target:  5'- gGGC-GCGGCGCC--CGACGACgauggCGGUg -3'
miRNA:   3'- -CUGuCGCCGUGGaaGCUGCUGa----GCCA- -5'
15672 3' -57 NC_004065.1 + 30054 0.73 0.601751
Target:  5'- gGACAGCGGCAgCguuaucgUUGAUGGCggCGGUg -3'
miRNA:   3'- -CUGUCGCCGUgGa------AGCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 127136 0.73 0.600767
Target:  5'- cGGCGGCGGCGCUacCGGCGGCggcgaucgcccucUCGGUc -3'
miRNA:   3'- -CUGUCGCCGUGGaaGCUGCUG-------------AGCCA- -5'
15672 3' -57 NC_004065.1 + 24530 0.74 0.543263
Target:  5'- uGGCGGCGGCAgCgaCGACGGCagCGGa -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 168557 0.76 0.433191
Target:  5'- uGGCAGCGGCGgCggCGGCGACagCGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 163487 0.71 0.719399
Target:  5'- -uCGGCGGCGCCgguggCGGCGGCuucaauucuUCGGa -3'
miRNA:   3'- cuGUCGCCGUGGaa---GCUGCUG---------AGCCa -5'
15672 3' -57 NC_004065.1 + 27282 0.71 0.738404
Target:  5'- aGAcCGGCGGCGCCgcCGACGACgCGu- -3'
miRNA:   3'- -CU-GUCGCCGUGGaaGCUGCUGaGCca -5'
15672 3' -57 NC_004065.1 + 166158 0.7 0.793959
Target:  5'- cGGCAGCGGCGCCgacgucgugcaccgCGAUGugUCuGa -3'
miRNA:   3'- -CUGUCGCCGUGGaa------------GCUGCugAGcCa -5'
15672 3' -57 NC_004065.1 + 113772 0.7 0.793084
Target:  5'- cGCGGCGGCAga--CGAcCGACUCGGg -3'
miRNA:   3'- cUGUCGCCGUggaaGCU-GCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 35626 0.7 0.793084
Target:  5'- cGGCGGCGGCGgCggggaugucaUCGGCGACagGGUc -3'
miRNA:   3'- -CUGUCGCCGUgGa---------AGCUGCUGagCCA- -5'
15672 3' -57 NC_004065.1 + 48104 0.7 0.793084
Target:  5'- uGGCGGCGGCGgUggCGGCGGCggUGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 141111 0.7 0.775312
Target:  5'- -uCAGCGGCAUCgcCGACGcGCUCaGGUu -3'
miRNA:   3'- cuGUCGCCGUGGaaGCUGC-UGAG-CCA- -5'
15672 3' -57 NC_004065.1 + 154152 0.7 0.766244
Target:  5'- gGGCGGUGGCGgCggCGGCGGCggCGGc -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 96769 0.71 0.738404
Target:  5'- cGGCggaGGCGGCAucgcggccgUCUUCGACGACUCuuGGa -3'
miRNA:   3'- -CUG---UCGCCGU---------GGAAGCUGCUGAG--CCa -5'
15672 3' -57 NC_004065.1 + 27400 0.71 0.738404
Target:  5'- aGCGGCGGCAUCgUCGuCGACUCc-- -3'
miRNA:   3'- cUGUCGCCGUGGaAGCuGCUGAGcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.