Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15672 | 3' | -57 | NC_004065.1 | + | 114867 | 0.72 | 0.680618 |
Target: 5'- gGGC-GCGGCGCC--CGACGACgauggCGGUg -3' miRNA: 3'- -CUGuCGCCGUGGaaGCUGCUGa----GCCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 30054 | 0.73 | 0.601751 |
Target: 5'- gGACAGCGGCAgCguuaucgUUGAUGGCggCGGUg -3' miRNA: 3'- -CUGUCGCCGUgGa------AGCUGCUGa-GCCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 127136 | 0.73 | 0.600767 |
Target: 5'- cGGCGGCGGCGCUacCGGCGGCggcgaucgcccucUCGGUc -3' miRNA: 3'- -CUGUCGCCGUGGaaGCUGCUG-------------AGCCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 24530 | 0.74 | 0.543263 |
Target: 5'- uGGCGGCGGCAgCgaCGACGGCagCGGa -3' miRNA: 3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 168557 | 0.76 | 0.433191 |
Target: 5'- uGGCAGCGGCGgCggCGGCGACagCGGg -3' miRNA: 3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 141111 | 0.7 | 0.775312 |
Target: 5'- -uCAGCGGCAUCgcCGACGcGCUCaGGUu -3' miRNA: 3'- cuGUCGCCGUGGaaGCUGC-UGAG-CCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 48104 | 0.7 | 0.793084 |
Target: 5'- uGGCGGCGGCGgUggCGGCGGCggUGGg -3' miRNA: 3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 201936 | 0.68 | 0.865508 |
Target: 5'- cGACAGCGGCACCcuguaGAUGAaCUCc-- -3' miRNA: 3'- -CUGUCGCCGUGGaag--CUGCU-GAGcca -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 170288 | 0.68 | 0.865508 |
Target: 5'- cGCGGuCGGCACCaUCGccgcCGGgUCGGUa -3' miRNA: 3'- cUGUC-GCCGUGGaAGCu---GCUgAGCCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 45115 | 0.68 | 0.865508 |
Target: 5'- -cCAGCGGCGgCgaaGGCGACUCGu- -3' miRNA: 3'- cuGUCGCCGUgGaagCUGCUGAGCca -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 24841 | 0.68 | 0.865508 |
Target: 5'- cGCAcGCGGCGCCcgauguuggCGGCGACggCGGc -3' miRNA: 3'- cUGU-CGCCGUGGaa-------GCUGCUGa-GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 118390 | 0.68 | 0.865508 |
Target: 5'- uACAGCGGCgucaucAUCUUCGGCG--UCGGg -3' miRNA: 3'- cUGUCGCCG------UGGAAGCUGCugAGCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 98241 | 0.68 | 0.858163 |
Target: 5'- --gAG-GGUGCCgaCGACGGCUCGGg -3' miRNA: 3'- cugUCgCCGUGGaaGCUGCUGAGCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 75806 | 0.68 | 0.850629 |
Target: 5'- cGGCGGCgaGGCACCUggcaCGACGACagaugaGGg -3' miRNA: 3'- -CUGUCG--CCGUGGAa---GCUGCUGag----CCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 163152 | 0.68 | 0.842909 |
Target: 5'- gGACAGCGGCucgucguCCggaUCGGCGGCccaGGg -3' miRNA: 3'- -CUGUCGCCGu------GGa--AGCUGCUGag-CCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 152309 | 0.69 | 0.818707 |
Target: 5'- cGGCGGCGGUGCCggCGGgGACgaugaCGGc -3' miRNA: 3'- -CUGUCGCCGUGGaaGCUgCUGa----GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 56125 | 0.69 | 0.818707 |
Target: 5'- cGACGGCGGCgcucGCCUUCuGCaGcCUCGGc -3' miRNA: 3'- -CUGUCGCCG----UGGAAGcUG-CuGAGCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 166158 | 0.7 | 0.793959 |
Target: 5'- cGGCAGCGGCGCCgacgucgugcaccgCGAUGugUCuGa -3' miRNA: 3'- -CUGUCGCCGUGGaa------------GCUGCugAGcCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 113772 | 0.7 | 0.793084 |
Target: 5'- cGCGGCGGCAga--CGAcCGACUCGGg -3' miRNA: 3'- cUGUCGCCGUggaaGCU-GCUGAGCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 35626 | 0.7 | 0.793084 |
Target: 5'- cGGCGGCGGCGgCggggaugucaUCGGCGACagGGUc -3' miRNA: 3'- -CUGUCGCCGUgGa---------AGCUGCUGagCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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