miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 58012 0.68 0.850629
Target:  5'- cGACGGCGGCGgCgaCGACGAuCUCu-- -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCU-GAGcca -5'
15672 3' -57 NC_004065.1 + 58318 0.68 0.850629
Target:  5'- gGGCGGUGGCGgCggCGGCGGCggaGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 146818 0.72 0.67081
Target:  5'- --gAGCGGCACCUUacccgcgacgcCGACGAUgUCGGg -3'
miRNA:   3'- cugUCGCCGUGGAA-----------GCUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 59954 0.73 0.591915
Target:  5'- cGCGGCcgcucGGCGCCcuucuaCGACGACUCGGa -3'
miRNA:   3'- cUGUCG-----CCGUGGaa----GCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 201868 0.74 0.524154
Target:  5'- cACGG-GGCGCagcuccugguCUUCGACGACUCGGg -3'
miRNA:   3'- cUGUCgCCGUG----------GAAGCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 88674 0.75 0.486759
Target:  5'- cGACGGCGGCgggcuccgcuGCCggcggUGGCGGCUCGGc -3'
miRNA:   3'- -CUGUCGCCG----------UGGaa---GCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 149485 0.75 0.468538
Target:  5'- cGACGGCGGCGgCggCGGCGGCagCGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 21735 0.76 0.433191
Target:  5'- aACAGCGGCACCUgcgUGugGAacUUCGGa -3'
miRNA:   3'- cUGUCGCCGUGGAa--GCugCU--GAGCCa -5'
15672 3' -57 NC_004065.1 + 97853 0.77 0.407723
Target:  5'- cGGCGGCGGCcuCCUUCGACGugUUGc- -3'
miRNA:   3'- -CUGUCGCCGu-GGAAGCUGCugAGCca -5'
15672 3' -57 NC_004065.1 + 113956 0.8 0.282355
Target:  5'- cGGCGGCGGCAgCggCGACGGCgUCGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 67018 0.72 0.679639
Target:  5'- aGCGGCGGCGCCggCGccuccucGCGAUUcCGGUa -3'
miRNA:   3'- cUGUCGCCGUGGaaGC-------UGCUGA-GCCA- -5'
15672 3' -57 NC_004065.1 + 73972 0.71 0.719399
Target:  5'- aGCAGUGGCGCCagcagCGGCGGCggaGGa -3'
miRNA:   3'- cUGUCGCCGUGGaa---GCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 76622 0.69 0.826942
Target:  5'- cGCGGCGGCGCCggcgCGAUGGagaUCGa- -3'
miRNA:   3'- cUGUCGCCGUGGaa--GCUGCUg--AGCca -5'
15672 3' -57 NC_004065.1 + 62094 0.69 0.818707
Target:  5'- cGACAGCGGCgcgacGCCUuguUUGACGACgccgUCGaGUc -3'
miRNA:   3'- -CUGUCGCCG-----UGGA---AGCUGCUG----AGC-CA- -5'
15672 3' -57 NC_004065.1 + 1428 0.69 0.810314
Target:  5'- cGGCAGCGGCGCC---GACGACacaaUGGg -3'
miRNA:   3'- -CUGUCGCCGUGGaagCUGCUGa---GCCa -5'
15672 3' -57 NC_004065.1 + 200281 0.7 0.793084
Target:  5'- cGCGGaaCGGCACCUgccccUGACGACcgCGGUg -3'
miRNA:   3'- cUGUC--GCCGUGGAa----GCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 36209 0.7 0.784262
Target:  5'- aGCAGCGGCGCgagucCGACGACcugCGGc -3'
miRNA:   3'- cUGUCGCCGUGgaa--GCUGCUGa--GCCa -5'
15672 3' -57 NC_004065.1 + 24847 0.71 0.738404
Target:  5'- cGGCGGCGGCGgUggCGGCGACgacacgcgCGGa -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-------GCCa -5'
15672 3' -57 NC_004065.1 + 199648 0.71 0.738404
Target:  5'- --gAGCGGCACCUggGACGAgaUGGa -3'
miRNA:   3'- cugUCGCCGUGGAagCUGCUgaGCCa -5'
15672 3' -57 NC_004065.1 + 146298 0.71 0.728941
Target:  5'- cGGCAuccucggucGUGGCGCCUUCGGCGAUgauGGa -3'
miRNA:   3'- -CUGU---------CGCCGUGGAAGCUGCUGag-CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.