Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15672 | 3' | -57 | NC_004065.1 | + | 76622 | 0.69 | 0.826942 |
Target: 5'- cGCGGCGGCGCCggcgCGAUGGagaUCGa- -3' miRNA: 3'- cUGUCGCCGUGGaa--GCUGCUg--AGCca -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 62094 | 0.69 | 0.818707 |
Target: 5'- cGACAGCGGCgcgacGCCUuguUUGACGACgccgUCGaGUc -3' miRNA: 3'- -CUGUCGCCG-----UGGA---AGCUGCUG----AGC-CA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 1428 | 0.69 | 0.810314 |
Target: 5'- cGGCAGCGGCGCC---GACGACacaaUGGg -3' miRNA: 3'- -CUGUCGCCGUGGaagCUGCUGa---GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 200281 | 0.7 | 0.793084 |
Target: 5'- cGCGGaaCGGCACCUgccccUGACGACcgCGGUg -3' miRNA: 3'- cUGUC--GCCGUGGAa----GCUGCUGa-GCCA- -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 36209 | 0.7 | 0.784262 |
Target: 5'- aGCAGCGGCGCgagucCGACGACcugCGGc -3' miRNA: 3'- cUGUCGCCGUGgaa--GCUGCUGa--GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 24847 | 0.71 | 0.738404 |
Target: 5'- cGGCGGCGGCGgUggCGGCGACgacacgcgCGGa -3' miRNA: 3'- -CUGUCGCCGUgGaaGCUGCUGa-------GCCa -5' |
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15672 | 3' | -57 | NC_004065.1 | + | 18956 | 1.08 | 0.004503 |
Target: 5'- cGACAGCGGCACCUUCGACGACUCGGUg -3' miRNA: 3'- -CUGUCGCCGUGGAAGCUGCUGAGCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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