miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 87006 0.68 0.858163
Target:  5'- cGGgGGCGGCAgCUUCaagggccgaGGCGGCgUCGGg -3'
miRNA:   3'- -CUgUCGCCGUgGAAG---------CUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 58318 0.68 0.850629
Target:  5'- gGGCGGUGGCGgCggCGGCGGCggaGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 73972 0.71 0.719399
Target:  5'- aGCAGUGGCGCCagcagCGGCGGCggaGGa -3'
miRNA:   3'- cUGUCGCCGUGGaa---GCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 21735 0.76 0.433191
Target:  5'- aACAGCGGCACCUgcgUGugGAacUUCGGa -3'
miRNA:   3'- cUGUCGCCGUGGAa--GCugCU--GAGCCa -5'
15672 3' -57 NC_004065.1 + 226722 0.67 0.916853
Target:  5'- cGCAGCGGCGCUggcagaaGGCGAgCcCGGUc -3'
miRNA:   3'- cUGUCGCCGUGGaag----CUGCU-GaGCCA- -5'
15672 3' -57 NC_004065.1 + 164811 0.68 0.879604
Target:  5'- aGCGGuCGGCGCCgcCGcCGGCUCGa- -3'
miRNA:   3'- cUGUC-GCCGUGGaaGCuGCUGAGCca -5'
15672 3' -57 NC_004065.1 + 62094 0.69 0.818707
Target:  5'- cGACAGCGGCgcgacGCCUuguUUGACGACgccgUCGaGUc -3'
miRNA:   3'- -CUGUCGCCG-----UGGA---AGCUGCUG----AGC-CA- -5'
15672 3' -57 NC_004065.1 + 97853 0.77 0.407723
Target:  5'- cGGCGGCGGCcuCCUUCGACGugUUGc- -3'
miRNA:   3'- -CUGUCGCCGu-GGAAGCUGCugAGCca -5'
15672 3' -57 NC_004065.1 + 163679 0.68 0.872656
Target:  5'- cGGCGGCGGcCACCgcggcguugcCGACGcuCUCGGc -3'
miRNA:   3'- -CUGUCGCC-GUGGaa--------GCUGCu-GAGCCa -5'
15672 3' -57 NC_004065.1 + 113956 0.8 0.282355
Target:  5'- cGGCGGCGGCAgCggCGACGGCgUCGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 76622 0.69 0.826942
Target:  5'- cGCGGCGGCGCCggcgCGAUGGagaUCGa- -3'
miRNA:   3'- cUGUCGCCGUGGaa--GCUGCUg--AGCca -5'
15672 3' -57 NC_004065.1 + 38308 0.68 0.858163
Target:  5'- -cCGGCGGCACgUUgGACGGgUCGuGg -3'
miRNA:   3'- cuGUCGCCGUGgAAgCUGCUgAGC-Ca -5'
15672 3' -57 NC_004065.1 + 36209 0.7 0.784262
Target:  5'- aGCAGCGGCGCgagucCGACGACcugCGGc -3'
miRNA:   3'- cUGUCGCCGUGgaa--GCUGCUGa--GCCa -5'
15672 3' -57 NC_004065.1 + 146298 0.71 0.728941
Target:  5'- cGGCAuccucggucGUGGCGCCUUCGGCGAUgauGGa -3'
miRNA:   3'- -CUGU---------CGCCGUGGAAGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 59954 0.73 0.591915
Target:  5'- cGCGGCcgcucGGCGCCcuucuaCGACGACUCGGa -3'
miRNA:   3'- cUGUCG-----CCGUGGaa----GCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 149485 0.75 0.468538
Target:  5'- cGACGGCGGCGgCggCGGCGGCagCGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 230201 0.66 0.927517
Target:  5'- uGCcGCGGCGCCcUCGGCGGCa---- -3'
miRNA:   3'- cUGuCGCCGUGGaAGCUGCUGagcca -5'
15672 3' -57 NC_004065.1 + 100253 0.67 0.916853
Target:  5'- cGGCGGCGGCGgCUacgacgaagaCGACGACccgCGGc -3'
miRNA:   3'- -CUGUCGCCGUgGAa---------GCUGCUGa--GCCa -5'
15672 3' -57 NC_004065.1 + 170704 0.67 0.911188
Target:  5'- cGGCAGCgaaGGCGCCUcCGGCGGCg---- -3'
miRNA:   3'- -CUGUCG---CCGUGGAaGCUGCUGagcca -5'
15672 3' -57 NC_004065.1 + 143192 0.67 0.886346
Target:  5'- gGGCAGCuGGC-CCUggugccggaacUCGACGGC-CGGc -3'
miRNA:   3'- -CUGUCG-CCGuGGA-----------AGCUGCUGaGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.