miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 87006 0.68 0.858163
Target:  5'- cGGgGGCGGCAgCUUCaagggccgaGGCGGCgUCGGg -3'
miRNA:   3'- -CUgUCGCCGUgGAAG---------CUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 58318 0.68 0.850629
Target:  5'- gGGCGGUGGCGgCggCGGCGGCggaGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 36209 0.7 0.784262
Target:  5'- aGCAGCGGCGCgagucCGACGACcugCGGc -3'
miRNA:   3'- cUGUCGCCGUGgaa--GCUGCUGa--GCCa -5'
15672 3' -57 NC_004065.1 + 146298 0.71 0.728941
Target:  5'- cGGCAuccucggucGUGGCGCCUUCGGCGAUgauGGa -3'
miRNA:   3'- -CUGU---------CGCCGUGGAAGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 59954 0.73 0.591915
Target:  5'- cGCGGCcgcucGGCGCCcuucuaCGACGACUCGGa -3'
miRNA:   3'- cUGUCG-----CCGUGGaa----GCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 149485 0.75 0.468538
Target:  5'- cGACGGCGGCGgCggCGGCGGCagCGGg -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 201171 0.66 0.941399
Target:  5'- cGCAGCaGCGCCgacaccaagCGGCGcgucccgGCUCGGg -3'
miRNA:   3'- cUGUCGcCGUGGaa-------GCUGC-------UGAGCCa -5'
15672 3' -57 NC_004065.1 + 20718 0.66 0.941844
Target:  5'- cACGaCGGCACCgaCGGCGACgaCGGc -3'
miRNA:   3'- cUGUcGCCGUGGaaGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 29976 0.66 0.941844
Target:  5'- uGGCGGCGGCGg---CGGCGGCagUGGUa -3'
miRNA:   3'- -CUGUCGCCGUggaaGCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 78581 0.66 0.93729
Target:  5'- cGACAGUGGCAacagCGACGGCg-GGc -3'
miRNA:   3'- -CUGUCGCCGUggaaGCUGCUGagCCa -5'
15672 3' -57 NC_004065.1 + 67130 0.66 0.93729
Target:  5'- gGACAGCGGCgcgcGCCUggaCG-CGAUcgCGGa -3'
miRNA:   3'- -CUGUCGCCG----UGGAa--GCuGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 115837 0.66 0.932515
Target:  5'- --gAGCGGcCGCCUccuccUCGuACGAgUCGGg -3'
miRNA:   3'- cugUCGCC-GUGGA-----AGC-UGCUgAGCCa -5'
15672 3' -57 NC_004065.1 + 141111 0.7 0.775312
Target:  5'- -uCAGCGGCAUCgcCGACGcGCUCaGGUu -3'
miRNA:   3'- cuGUCGCCGUGGaaGCUGC-UGAG-CCA- -5'
15672 3' -57 NC_004065.1 + 98262 0.66 0.932515
Target:  5'- gGACGGCGGC-CCUgggCGcGCGcCUCGcGg -3'
miRNA:   3'- -CUGUCGCCGuGGAa--GC-UGCuGAGC-Ca -5'
15672 3' -57 NC_004065.1 + 170288 0.68 0.865508
Target:  5'- cGCGGuCGGCACCaUCGccgcCGGgUCGGUa -3'
miRNA:   3'- cUGUC-GCCGUGGaAGCu---GCUgAGCCA- -5'
15672 3' -57 NC_004065.1 + 201936 0.68 0.865508
Target:  5'- cGACAGCGGCACCcuguaGAUGAaCUCc-- -3'
miRNA:   3'- -CUGUCGCCGUGGaag--CUGCU-GAGcca -5'
15672 3' -57 NC_004065.1 + 121422 0.68 0.870532
Target:  5'- gGACGGCGGCuucagcggauggGCgcucggguucgacaCUUCGACGACcaggUCGGUc -3'
miRNA:   3'- -CUGUCGCCG------------UG--------------GAAGCUGCUG----AGCCA- -5'
15672 3' -57 NC_004065.1 + 128571 0.71 0.690389
Target:  5'- cGCAGCGGCAgCgacgUCGGCGGCgaaGGc -3'
miRNA:   3'- cUGUCGCCGUgGa---AGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 174479 0.68 0.872656
Target:  5'- -uCGGCGG-ACCUUUGACu-CUCGGUc -3'
miRNA:   3'- cuGUCGCCgUGGAAGCUGcuGAGCCA- -5'
15672 3' -57 NC_004065.1 + 154152 0.7 0.766244
Target:  5'- gGGCGGUGGCGgCggCGGCGGCggCGGc -3'
miRNA:   3'- -CUGUCGCCGUgGaaGCUGCUGa-GCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.