miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 163152 0.68 0.842909
Target:  5'- gGACAGCGGCucgucguCCggaUCGGCGGCccaGGg -3'
miRNA:   3'- -CUGUCGCCGu------GGa--AGCUGCUGag-CCa -5'
15672 3' -57 NC_004065.1 + 75806 0.68 0.850629
Target:  5'- cGGCGGCgaGGCACCUggcaCGACGACagaugaGGg -3'
miRNA:   3'- -CUGUCG--CCGUGGAa---GCUGCUGag----CCa -5'
15672 3' -57 NC_004065.1 + 98241 0.68 0.858163
Target:  5'- --gAG-GGUGCCgaCGACGGCUCGGg -3'
miRNA:   3'- cugUCgCCGUGGaaGCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 118390 0.68 0.865508
Target:  5'- uACAGCGGCgucaucAUCUUCGGCG--UCGGg -3'
miRNA:   3'- cUGUCGCCG------UGGAAGCUGCugAGCCa -5'
15672 3' -57 NC_004065.1 + 24841 0.68 0.865508
Target:  5'- cGCAcGCGGCGCCcgauguuggCGGCGACggCGGc -3'
miRNA:   3'- cUGU-CGCCGUGGaa-------GCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 45115 0.68 0.865508
Target:  5'- -cCAGCGGCGgCgaaGGCGACUCGu- -3'
miRNA:   3'- cuGUCGCCGUgGaagCUGCUGAGCca -5'
15672 3' -57 NC_004065.1 + 170288 0.68 0.865508
Target:  5'- cGCGGuCGGCACCaUCGccgcCGGgUCGGUa -3'
miRNA:   3'- cUGUC-GCCGUGGaAGCu---GCUgAGCCA- -5'
15672 3' -57 NC_004065.1 + 201936 0.68 0.865508
Target:  5'- cGACAGCGGCACCcuguaGAUGAaCUCc-- -3'
miRNA:   3'- -CUGUCGCCGUGGaag--CUGCU-GAGcca -5'
15672 3' -57 NC_004065.1 + 70102 0.67 0.916853
Target:  5'- cGACgAGCaGCACCggcagCGGCGGCggCGGc -3'
miRNA:   3'- -CUG-UCGcCGUGGaa---GCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 67748 0.66 0.920146
Target:  5'- --gAGCGGCGCCgcgucCGACGGCgugacgaacggcgCGGg -3'
miRNA:   3'- cugUCGCCGUGGaa---GCUGCUGa------------GCCa -5'
15672 3' -57 NC_004065.1 + 56647 0.66 0.922297
Target:  5'- cGGCcGCGGCACCcuucaccgucggUUCGACGuuCUCGu- -3'
miRNA:   3'- -CUGuCGCCGUGG------------AAGCUGCu-GAGCca -5'
15672 3' -57 NC_004065.1 + 78581 0.66 0.93729
Target:  5'- cGACAGUGGCAacagCGACGGCg-GGc -3'
miRNA:   3'- -CUGUCGCCGUggaaGCUGCUGagCCa -5'
15672 3' -57 NC_004065.1 + 67130 0.66 0.93729
Target:  5'- gGACAGCGGCgcgcGCCUggaCG-CGAUcgCGGa -3'
miRNA:   3'- -CUGUCGCCG----UGGAa--GCuGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 115837 0.66 0.932515
Target:  5'- --gAGCGGcCGCCUccuccUCGuACGAgUCGGg -3'
miRNA:   3'- cugUCGCC-GUGGA-----AGC-UGCUgAGCCa -5'
15672 3' -57 NC_004065.1 + 98262 0.66 0.932515
Target:  5'- gGACGGCGGC-CCUgggCGcGCGcCUCGcGg -3'
miRNA:   3'- -CUGUCGCCGuGGAa--GC-UGCuGAGC-Ca -5'
15672 3' -57 NC_004065.1 + 62491 0.66 0.932025
Target:  5'- cGCGGCGGUAgcguuggUCUUCGGC-AUUCGGg -3'
miRNA:   3'- cUGUCGCCGU-------GGAAGCUGcUGAGCCa -5'
15672 3' -57 NC_004065.1 + 200787 0.66 0.927517
Target:  5'- cGCGGCGGUGgCgggCGACGGCgucUCGGc -3'
miRNA:   3'- cUGUCGCCGUgGaa-GCUGCUG---AGCCa -5'
15672 3' -57 NC_004065.1 + 45986 0.66 0.927517
Target:  5'- aACGGCgaccugGGCGCCguggCGGCGuugaACUCGGg -3'
miRNA:   3'- cUGUCG------CCGUGGaa--GCUGC----UGAGCCa -5'
15672 3' -57 NC_004065.1 + 68767 0.66 0.927005
Target:  5'- cGCGGCGGUgcuggcgGCCUUCaaGGcCGugUCGGa -3'
miRNA:   3'- cUGUCGCCG-------UGGAAG--CU-GCugAGCCa -5'
15672 3' -57 NC_004065.1 + 70507 0.66 0.922297
Target:  5'- cGAUGGCGGCGCCcuucUCGACGgaGCUgcaGGc -3'
miRNA:   3'- -CUGUCGCCGUGGa---AGCUGC--UGAg--CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.