miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 67748 0.66 0.920146
Target:  5'- --gAGCGGCGCCgcgucCGACGGCgugacgaacggcgCGGg -3'
miRNA:   3'- cugUCGCCGUGGaa---GCUGCUGa------------GCCa -5'
15672 3' -57 NC_004065.1 + 56647 0.66 0.922297
Target:  5'- cGGCcGCGGCACCcuucaccgucggUUCGACGuuCUCGu- -3'
miRNA:   3'- -CUGuCGCCGUGG------------AAGCUGCu-GAGCca -5'
15672 3' -57 NC_004065.1 + 70507 0.66 0.922297
Target:  5'- cGAUGGCGGCGCCcuucUCGACGgaGCUgcaGGc -3'
miRNA:   3'- -CUGUCGCCGUGGa---AGCUGC--UGAg--CCa -5'
15672 3' -57 NC_004065.1 + 68767 0.66 0.927005
Target:  5'- cGCGGCGGUgcuggcgGCCUUCaaGGcCGugUCGGa -3'
miRNA:   3'- cUGUCGCCG-------UGGAAG--CU-GCugAGCCa -5'
15672 3' -57 NC_004065.1 + 45986 0.66 0.927517
Target:  5'- aACGGCgaccugGGCGCCguggCGGCGuugaACUCGGg -3'
miRNA:   3'- cUGUCG------CCGUGGaa--GCUGC----UGAGCCa -5'
15672 3' -57 NC_004065.1 + 151092 0.66 0.927517
Target:  5'- gGGCcuGGUGGCGCCcgagcUCGGCGACgaCGGc -3'
miRNA:   3'- -CUG--UCGCCGUGGa----AGCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 200787 0.66 0.927517
Target:  5'- cGCGGCGGUGgCgggCGACGGCgucUCGGc -3'
miRNA:   3'- cUGUCGCCGUgGaa-GCUGCUG---AGCCa -5'
15672 3' -57 NC_004065.1 + 62491 0.66 0.932025
Target:  5'- cGCGGCGGUAgcguuggUCUUCGGC-AUUCGGg -3'
miRNA:   3'- cUGUCGCCGU-------GGAAGCUGcUGAGCCa -5'
15672 3' -57 NC_004065.1 + 68167 0.67 0.911188
Target:  5'- cGCGGCGGCGCgcgCGACGGagcugUCGGc -3'
miRNA:   3'- cUGUCGCCGUGgaaGCUGCUg----AGCCa -5'
15672 3' -57 NC_004065.1 + 213220 0.67 0.911188
Target:  5'- cGACGGCGGC-CgUggaCGAUGGUUCGGUc -3'
miRNA:   3'- -CUGUCGCCGuGgAa--GCUGCUGAGCCA- -5'
15672 3' -57 NC_004065.1 + 159470 0.67 0.911188
Target:  5'- aGACGuCGGCGCgUUCGGCGGagaCGGa -3'
miRNA:   3'- -CUGUcGCCGUGgAAGCUGCUga-GCCa -5'
15672 3' -57 NC_004065.1 + 174479 0.68 0.872656
Target:  5'- -uCGGCGG-ACCUUUGACu-CUCGGUc -3'
miRNA:   3'- cuGUCGCCgUGGAAGCUGcuGAGCCA- -5'
15672 3' -57 NC_004065.1 + 82599 0.68 0.879604
Target:  5'- -uCGGCGaGCACCaggUUGACGACcUGGUc -3'
miRNA:   3'- cuGUCGC-CGUGGa--AGCUGCUGaGCCA- -5'
15672 3' -57 NC_004065.1 + 61648 0.68 0.879604
Target:  5'- aGACGGuUGGCGCUggaGACGAUggCGGUg -3'
miRNA:   3'- -CUGUC-GCCGUGGaagCUGCUGa-GCCA- -5'
15672 3' -57 NC_004065.1 + 151134 0.67 0.886346
Target:  5'- aGGCGGCGGCaacGCCg-CGAUGAUcgUCGGc -3'
miRNA:   3'- -CUGUCGCCG---UGGaaGCUGCUG--AGCCa -5'
15672 3' -57 NC_004065.1 + 77013 0.67 0.886346
Target:  5'- aGGCGGCGuGCugCgaccuCGACUCGGa -3'
miRNA:   3'- -CUGUCGC-CGugGaagcuGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 91658 0.67 0.886346
Target:  5'- aACAGCGGCGCga-UGACGACggGGg -3'
miRNA:   3'- cUGUCGCCGUGgaaGCUGCUGagCCa -5'
15672 3' -57 NC_004065.1 + 123037 0.67 0.892879
Target:  5'- cGACGGCGcuGCGCCUUC--CG-CUCGGg -3'
miRNA:   3'- -CUGUCGC--CGUGGAAGcuGCuGAGCCa -5'
15672 3' -57 NC_004065.1 + 148637 0.67 0.905303
Target:  5'- gGACAGCGGCAgCgacUCGAUGGCg---- -3'
miRNA:   3'- -CUGUCGCCGUgGa--AGCUGCUGagcca -5'
15672 3' -57 NC_004065.1 + 145426 0.67 0.91061
Target:  5'- cGGCGGCGGCGCUuagggaaucgcgaUggagaggCGAUGGCgUCGGg -3'
miRNA:   3'- -CUGUCGCCGUGG-------------Aa------GCUGCUG-AGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.