Results 101 - 107 of 107 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15672 | 3' | -57 | NC_004065.1 | + | 61648 | 0.68 | 0.879604 |
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Target: 5'- aGACGGuUGGCGCUggaGACGAUggCGGUg -3' miRNA: 3'- -CUGUC-GCCGUGGaagCUGCUGa-GCCA- -5' |
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| 15672 | 3' | -57 | NC_004065.1 | + | 151134 | 0.67 | 0.886346 |
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Target: 5'- aGGCGGCGGCaacGCCg-CGAUGAUcgUCGGc -3' miRNA: 3'- -CUGUCGCCG---UGGaaGCUGCUG--AGCCa -5' |
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| 15672 | 3' | -57 | NC_004065.1 | + | 77013 | 0.67 | 0.886346 |
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Target: 5'- aGGCGGCGuGCugCgaccuCGACUCGGa -3' miRNA: 3'- -CUGUCGC-CGugGaagcuGCUGAGCCa -5' |
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| 15672 | 3' | -57 | NC_004065.1 | + | 91658 | 0.67 | 0.886346 |
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Target: 5'- aACAGCGGCGCga-UGACGACggGGg -3' miRNA: 3'- cUGUCGCCGUGgaaGCUGCUGagCCa -5' |
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| 15672 | 3' | -57 | NC_004065.1 | + | 123037 | 0.67 | 0.892879 |
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Target: 5'- cGACGGCGcuGCGCCUUC--CG-CUCGGg -3' miRNA: 3'- -CUGUCGC--CGUGGAAGcuGCuGAGCCa -5' |
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| 15672 | 3' | -57 | NC_004065.1 | + | 152451 | 0.67 | 0.905303 |
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Target: 5'- uACAcCGGCACUUUCGACGAuUUCGc- -3' miRNA: 3'- cUGUcGCCGUGGAAGCUGCU-GAGCca -5' |
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| 15672 | 3' | -57 | NC_004065.1 | + | 98262 | 0.66 | 0.932515 |
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Target: 5'- gGACGGCGGC-CCUgggCGcGCGcCUCGcGg -3' miRNA: 3'- -CUGUCGCCGuGGAa--GC-UGCuGAGC-Ca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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