miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 3' -57 NC_004065.1 + 68767 0.66 0.927005
Target:  5'- cGCGGCGGUgcuggcgGCCUUCaaGGcCGugUCGGa -3'
miRNA:   3'- cUGUCGCCG-------UGGAAG--CU-GCugAGCCa -5'
15672 3' -57 NC_004065.1 + 56647 0.66 0.922297
Target:  5'- cGGCcGCGGCACCcuucaccgucggUUCGACGuuCUCGu- -3'
miRNA:   3'- -CUGuCGCCGUGG------------AAGCUGCu-GAGCca -5'
15672 3' -57 NC_004065.1 + 76926 0.66 0.922297
Target:  5'- gGACGGCGGCGCCgacgCGAucCGuuUCGa- -3'
miRNA:   3'- -CUGUCGCCGUGGaa--GCU--GCugAGCca -5'
15672 3' -57 NC_004065.1 + 70507 0.66 0.922297
Target:  5'- cGAUGGCGGCGCCcuucUCGACGgaGCUgcaGGc -3'
miRNA:   3'- -CUGUCGCCGUGGa---AGCUGC--UGAg--CCa -5'
15672 3' -57 NC_004065.1 + 67748 0.66 0.920146
Target:  5'- --gAGCGGCGCCgcgucCGACGGCgugacgaacggcgCGGg -3'
miRNA:   3'- cugUCGCCGUGGaa---GCUGCUGa------------GCCa -5'
15672 3' -57 NC_004065.1 + 194713 0.67 0.919057
Target:  5'- aGCGGCGGCGCCgccgugcccaaccgcUUCGACcgaGGCgccCGGg -3'
miRNA:   3'- cUGUCGCCGUGG---------------AAGCUG---CUGa--GCCa -5'
15672 3' -57 NC_004065.1 + 70102 0.67 0.916853
Target:  5'- cGACgAGCaGCACCggcagCGGCGGCggCGGc -3'
miRNA:   3'- -CUG-UCGcCGUGGaa---GCUGCUGa-GCCa -5'
15672 3' -57 NC_004065.1 + 100253 0.67 0.916853
Target:  5'- cGGCGGCGGCGgCUacgacgaagaCGACGACccgCGGc -3'
miRNA:   3'- -CUGUCGCCGUgGAa---------GCUGCUGa--GCCa -5'
15672 3' -57 NC_004065.1 + 226722 0.67 0.916853
Target:  5'- cGCAGCGGCGCUggcagaaGGCGAgCcCGGUc -3'
miRNA:   3'- cUGUCGCCGUGGaag----CUGCU-GaGCCA- -5'
15672 3' -57 NC_004065.1 + 194561 0.67 0.916853
Target:  5'- aGAC--UGGUACCgcUGGCGACUCGGc -3'
miRNA:   3'- -CUGucGCCGUGGaaGCUGCUGAGCCa -5'
15672 3' -57 NC_004065.1 + 213220 0.67 0.911188
Target:  5'- cGACGGCGGC-CgUggaCGAUGGUUCGGUc -3'
miRNA:   3'- -CUGUCGCCGuGgAa--GCUGCUGAGCCA- -5'
15672 3' -57 NC_004065.1 + 68167 0.67 0.911188
Target:  5'- cGCGGCGGCGCgcgCGACGGagcugUCGGc -3'
miRNA:   3'- cUGUCGCCGUGgaaGCUGCUg----AGCCa -5'
15672 3' -57 NC_004065.1 + 197962 0.67 0.911188
Target:  5'- cACGGCGGC-Cg--CGACGGCgUCGGa -3'
miRNA:   3'- cUGUCGCCGuGgaaGCUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 195155 0.67 0.911188
Target:  5'- aGACGGCGGCGCC---GugGuCUCGa- -3'
miRNA:   3'- -CUGUCGCCGUGGaagCugCuGAGCca -5'
15672 3' -57 NC_004065.1 + 170704 0.67 0.911188
Target:  5'- cGGCAGCgaaGGCGCCUcCGGCGGCg---- -3'
miRNA:   3'- -CUGUCG---CCGUGGAaGCUGCUGagcca -5'
15672 3' -57 NC_004065.1 + 24353 0.67 0.911188
Target:  5'- cGACGuCGGCGCCaUgGACGucCUCGGc -3'
miRNA:   3'- -CUGUcGCCGUGGaAgCUGCu-GAGCCa -5'
15672 3' -57 NC_004065.1 + 159470 0.67 0.911188
Target:  5'- aGACGuCGGCGCgUUCGGCGGagaCGGa -3'
miRNA:   3'- -CUGUcGCCGUGgAAGCUGCUga-GCCa -5'
15672 3' -57 NC_004065.1 + 145426 0.67 0.91061
Target:  5'- cGGCGGCGGCGCUuagggaaucgcgaUggagaggCGAUGGCgUCGGg -3'
miRNA:   3'- -CUGUCGCCGUGG-------------Aa------GCUGCUG-AGCCa -5'
15672 3' -57 NC_004065.1 + 152451 0.67 0.905303
Target:  5'- uACAcCGGCACUUUCGACGAuUUCGc- -3'
miRNA:   3'- cUGUcGCCGUGGAAGCUGCU-GAGCca -5'
15672 3' -57 NC_004065.1 + 148637 0.67 0.905303
Target:  5'- gGACAGCGGCAgCgacUCGAUGGCg---- -3'
miRNA:   3'- -CUGUCGCCGUgGa--AGCUGCUGagcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.