miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15672 5' -52.2 NC_004065.1 + 125435 0.66 0.996264
Target:  5'- gGGGCCuGCUGGCGuucgccaacaGCUACGAc- -3'
miRNA:   3'- -CCUGG-CGACCGCuucua-----CGAUGUUcu -5'
15672 5' -52.2 NC_004065.1 + 141118 0.66 0.995375
Target:  5'- uGGACuCGCUGGCGGcg--GCcuuCAGGGc -3'
miRNA:   3'- -CCUG-GCGACCGCUucuaCGau-GUUCU- -5'
15672 5' -52.2 NC_004065.1 + 201320 0.66 0.995375
Target:  5'- -cGCCGgaGGCGggGc-GCUACGAc- -3'
miRNA:   3'- ccUGGCgaCCGCuuCuaCGAUGUUcu -5'
15672 5' -52.2 NC_004065.1 + 186287 0.66 0.994944
Target:  5'- cGGGCagaaaGCuggguuaucucgacgUGGCGGAGAaGCUgcGCAAGGa -3'
miRNA:   3'- -CCUGg----CG---------------ACCGCUUCUaCGA--UGUUCU- -5'
15672 5' -52.2 NC_004065.1 + 67269 0.66 0.994717
Target:  5'- cGGCCGUUcaacggcacGGCGGAGAcgcaggaccugggggGCUACAAGu -3'
miRNA:   3'- cCUGGCGA---------CCGCUUCUa--------------CGAUGUUCu -5'
15672 5' -52.2 NC_004065.1 + 58197 0.66 0.99464
Target:  5'- gGGGCUGUgGGUGGAGggGCcGgGGGAg -3'
miRNA:   3'- -CCUGGCGaCCGCUUCuaCGaUgUUCU- -5'
15672 5' -52.2 NC_004065.1 + 173981 0.66 0.99464
Target:  5'- uGAUCGCgacGGCGAcGAUGacgaACAGGAg -3'
miRNA:   3'- cCUGGCGa--CCGCUuCUACga--UGUUCU- -5'
15672 5' -52.2 NC_004065.1 + 101909 0.66 0.99464
Target:  5'- -aGCUGCUGGagGAGGAUGCU-CGAu- -3'
miRNA:   3'- ccUGGCGACCg-CUUCUACGAuGUUcu -5'
15672 5' -52.2 NC_004065.1 + 51240 0.66 0.99464
Target:  5'- uGGAUggCGCUGGCcgcggaaauGAGGAUGC-GCAuGAg -3'
miRNA:   3'- -CCUG--GCGACCG---------CUUCUACGaUGUuCU- -5'
15672 5' -52.2 NC_004065.1 + 70183 0.66 0.993813
Target:  5'- -uGCUggGCUGGCagcaGAAGGUGCUGCugccGGAg -3'
miRNA:   3'- ccUGG--CGACCG----CUUCUACGAUGu---UCU- -5'
15672 5' -52.2 NC_004065.1 + 128853 0.66 0.993813
Target:  5'- gGGGCgGCUGGCGcgugcGGAUGCg------ -3'
miRNA:   3'- -CCUGgCGACCGCu----UCUACGauguucu -5'
15672 5' -52.2 NC_004065.1 + 86989 0.66 0.993813
Target:  5'- aGGGCCGa-GGCGGcgucGGggGCcgggGCAGGAg -3'
miRNA:   3'- -CCUGGCgaCCGCU----UCuaCGa---UGUUCU- -5'
15672 5' -52.2 NC_004065.1 + 33523 0.66 0.993725
Target:  5'- gGGAUaccgaguUGCUGGC--AGAUGCgcucggGCAGGAg -3'
miRNA:   3'- -CCUG-------GCGACCGcuUCUACGa-----UGUUCU- -5'
15672 5' -52.2 NC_004065.1 + 193826 0.67 0.991853
Target:  5'- aGACCuCUgcGGCGAAGGcaaUGCUAcCGAGGg -3'
miRNA:   3'- cCUGGcGA--CCGCUUCU---ACGAU-GUUCU- -5'
15672 5' -52.2 NC_004065.1 + 35626 0.67 0.991853
Target:  5'- cGGCgGCggcGGCGggGAUGUcaucggcgACAGGGu -3'
miRNA:   3'- cCUGgCGa--CCGCuuCUACGa-------UGUUCU- -5'
15672 5' -52.2 NC_004065.1 + 68261 0.67 0.991853
Target:  5'- cGGCUGCUGGCgucGAAGAUccuggcGCUGuuCGAGGa -3'
miRNA:   3'- cCUGGCGACCG---CUUCUA------CGAU--GUUCU- -5'
15672 5' -52.2 NC_004065.1 + 29965 0.67 0.991853
Target:  5'- gGGACCgguGCUGGCGGcGGcgGCggcgGCAGu- -3'
miRNA:   3'- -CCUGG---CGACCGCU-UCuaCGa---UGUUcu -5'
15672 5' -52.2 NC_004065.1 + 99860 0.67 0.991853
Target:  5'- cGACCGUccGGCGGAauucGUGCUGCAGc- -3'
miRNA:   3'- cCUGGCGa-CCGCUUc---UACGAUGUUcu -5'
15672 5' -52.2 NC_004065.1 + 38422 0.67 0.991853
Target:  5'- -uGCCGCUGGCGcGGAUcGCcGCGu-- -3'
miRNA:   3'- ccUGGCGACCGCuUCUA-CGaUGUucu -5'
15672 5' -52.2 NC_004065.1 + 118568 0.67 0.991853
Target:  5'- cGGucCCGCUGGCGAcGAgaacGCcgAUGAGGa -3'
miRNA:   3'- -CCu-GGCGACCGCUuCUa---CGa-UGUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.